RNA id: TU368936


Basic Information

Item Value
RNA id TU368936
length 2239
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G311507
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20682831 ~ 20685069 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAAGACCCATTTTGCAACAGTTTGCAcgcaaaaaaaattacaaaacctttcttttttttcaattcattgaattattattatttttttaaattcacttaCAGGTTAATTATAAAAAAGAGCTCAGGCATGGTGGGCGTGTATCTGCATAGGCTTCGAGAAACACTCAGATTTACCTTCCTGCCAAAAACTGATCTCAGAACAGCTCGTTAATTTGTCTTACGTCACTGCAGACTGAAAACGCATAAcgaaatgcttttatttcagcTCCGGGGATCAATTTCTAAAATTTACTGCGacgtttatatatatatatttatgttatgaGTAAATCTGTCGCTAGTCGTGCAAAAGATTCCGCGTCGACTTTTAGCCTTTTTCCATTTAACTAAAGAGCTGATTCACAACATGCAACACTAATATAGTGAAtgagaaatgtataaaataataataataataataataataataggccaAGCACAGCAGTACCTGAGATATGATGAGTAATAATGAGAATCGGCTCCGTGGAATCATCACTTATAAAATATTCGTACGTGTTTTTCTGACTGAAGAGAAACGGATGATGATGTTATTGCTTCAGTTTCGTACCAGAATCtgtaaatttattcattcatttgggAAAAACAGAGGAataatttgcattcatttgtGTATgtacaagctttttttttttttaccactaacaatcactttttaaatttctgtaaattttcacacatttctctGCACAGAAACTAATTTCATGCctgaaatgtaaagaaaaagtgaaaCGGCAGGAATACTGTCAatcagaggttaaaaaaaaataaaaaatccagcTGACAGAAAGTCGTAAAGGTTTGTTTTGATGCAAATAAAAAGTATAGAAAGTACTTATGCAtaaccaacaacaaaaaagaataaaaaattaaacattattttaaaaaaaaatgaactatgTAGCTAACTGTAGAATACGGCCATTAGAAATCtgaatttcagttaaaaaataaatttttattgtaaCATCTGACATTGAGTTTTGAACTTTTTGAAGTTGAATTTCAACATTTGACAAGAAGTTAAATtaacaactaaataaatataaaaaaataaactgaattttcaTGATTGAGGATATAGAAAGCATTTAAacttttgaaaatatttcaacTTCAATGTAAACCGATACTCAGTTTTCCTAAAAagccttgaatttttttttcttccagaaaAACTGAagttttcaaattaaatttcagAACATCTGGGTAAAAAAGTGAGTTATTACAGATGCAGATTAAaggtgtattattattattattattattattattattattattattattaatgatacaGCATGAACAATCTCCACTTTTCATGCAgtgaataaaaaacattttaaatcaaatttaaatgtacatatttgcTAAATTATCGATAATTATCATCCTTCCTGCTACCTGTTTTGGGTTTTAGCTACCTAACATCTCACAATGCGAACATTAGCTTGGAAATTTCAAATTTCTGATGGCACGATTCTTCCTAGCTCCATAGAAACATCTTGCGAAACTAGAAGTGCTGGAAAGTATGGAAACAAACCGGGCTTCAGAAATCCGCTGTTGTTTTACTAGCAAGTGATCTGGAGTGAACTCGGTGCAGAAAAACTCTCTttaggaaacagaaaaaaaaacaaaactgtaaataaaaaaaaaaaaaaaaaaagaaaagatgtaTTTGACTCAGCCGACTGAATGAATCATACATTAAAACCATCATCATCTGAGTGTTACTCTTGGTCGTGGATGTAAATGCAATAacgacagcaaaaaaaaaaaacaaaaaaaaacaaacaaaaaaaaataacagtaataatttcACATTGCATCACTCGATTAGTTTAAGATTACAGGATAAGATGATAATATTTACAAAGTAGCTGTACATGAGTTATTAGTACAATGTCGAGAACATGCACAGTCCTAAAACtagatcttttttcttttttttaaataacaaacctCCCACCATTTATATTTTGCATATAAAAAATTATCTGCCTCCTCatcaaaattaaacataaagaaaagaaaaatatttgcagTCAAACAGAATTAAAACATCTGAtcgtaataaaaaaaactttttgattGCTCGCAAAATATCTTTTACAGACAACGAACTGCTCGGAAATCCggattaaaaaattattttatgtacaAAAACAGCAGTCAAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU368955 lncRNA upstream 14558 20666267 ~ 20668273 (+) True G311516
TU368953 lncRNA upstream 17086 20662768 ~ 20665745 (+) True G311515
TU368841 lncRNA upstream 99236 20579953 ~ 20583595 (+) True G311444
TU368860 lncRNA upstream 138278 20544021 ~ 20544553 (+) True G311460
TU368880 lncRNA upstream 161023 20519861 ~ 20521808 (+) True G311471
TU368933 lncRNA downstream 98 20685167 ~ 20690740 (+) True G311506
TU368938 lncRNA downstream 82009 20767078 ~ 20804924 (+) True G311508
TU368924 lncRNA downstream 82557 20767626 ~ 20769828 (+) True G311504
TU368929 lncRNA downstream 96693 20781762 ~ 20782360 (+) True G311505
TU368910 lncRNA downstream 122789 20807858 ~ 20853515 (+) False znf740a
XM_026932838.2 mRNA upstream 21142 20654185 ~ 20661689 (+) True slc2a10
XM_026932837.2 mRNA upstream 21142 20654185 ~ 20661689 (+) False slc2a10
XM_026932903.2 mRNA upstream 32658 20633750 ~ 20650173 (+) True si:ch73-267c23.10
XM_026932496.2 mRNA upstream 61592 20618291 ~ 20621239 (+) True LOC113537838
XM_026932980.2 mRNA upstream 79767 20596752 ~ 20603064 (+) True LOC113538122
XM_034314152.1 mRNA downstream 146787 20831856 ~ 20860727 (+) True znf740a
XM_034314156.1 mRNA downstream 146787 20831856 ~ 20860727 (+) False znf740a
XM_034314164.1 mRNA downstream 146787 20831856 ~ 20860727 (+) False znf740a
XM_034314158.1 mRNA downstream 146787 20831856 ~ 20860727 (+) False znf740a
XM_034314165.1 mRNA downstream 146787 20831856 ~ 20860727 (+) False znf740a
TU368156 other upstream 898918 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 898918 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 1165672 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 1595025 19087025 ~ 19087806 (+) True G310681
TU367679 other upstream 1990817 18687453 ~ 18692014 (+) False snrpe
XR_004580241.1 other downstream 185583 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile