RNA id: XM_026932496.2


Basic Information

Item Value
RNA id XM_026932496.2
length 1174
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC113537838
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20618291 ~ 20621239 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAGATGTTGCGTTTCCATGGTGACACGaataacacttttaaaaataaagagagaacgaagagagaaaaaaaaccaaaggcAGAAACCTTGAAGAGGAGAAGTCAGgtCAGACCTTCATCCCGTCACACTGCTGTAGAGACCGACTGCGCCGTTACCTGcagacaggagaagaaaaaTGAGCACAGATAGCACAGATGTCTCAGCATCTTCACTGAAGAGCTGTGGTTCAGACAGAATGGGGAACACAAACGTCTGGTTCTTATCGCAGCCTAACACGAGACAGGCTCCTCTCAGCATTGAGAGCAATATAATGGATCTTCTCAATACGAGACTGAGTCCAGATCAGCTCCAGACCAACTACCACAAACTGGAGCTCCTCAAGAAGTCTTCCTTCTACATCGTGGTGATACGGCAGGACGTCCCTCAGCTGGGCAACCAGCACTACATCTCCAACTCCACCCTTATGCACTTCATTGACATATCGAGGTTCCAGCGTGTGAAGAGGGACGGCAACAACCAGGTGAAGCTCCAGCTGGCGCTGCTCGAGATGCTGTACGCCGAGCTAACCAGGGGTCGAGAGGAACTGCAGGACATCTTGGCTCAAAAAAGTGGCCCGTCCCTCTTGCTCAGAGACGCTGAGATCCAGGAGAAGATCCTCAGGCTCCACCAGGTGGCTGACGACTTTGATGCAGCGATGATTCCCGGGAAGCTCCATGTCAAACACAGCCTGATCCCCGAGCTGGAAAGCAAAAGGTTGCCAAAGTTTCAGCTGGTGCTGGAGGCCGAGAAGCCGGTGATGTTTAACAGAGAGCAAACTCAAGCCTTTTGTGATTCGGTGGTTCTTCACTGGTACATCGCTGAACAGGAGCAGCACAAACCGGATGAGGAATTCGAGATCCATTACAAACTCATCAATCCGACAAACGAAACCGAAGCCAGAGAGTTCGGCTCCCTGGCCTGCTCAAGTTACGTTATTAAACTCACAGACCTGAGGCCAGACCGCAGCTACGAGTTCAGCGTGAAGAGATTAGACATCGCCGGGCTGGTTTATGGGGTCTGGAAGGACAGCATCGTCCTCACAACCACCTCACCACACACCAGCGTTTAGTTATATATCCTACAGTTCTAAATCTTATAGTTATATTTCCTACAGTTCTAAATCTTATCGTTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU368841 lncRNA upstream 34696 20579953 ~ 20583595 (+) True G311444
TU368860 lncRNA upstream 73738 20544021 ~ 20544553 (+) True G311460
TU368880 lncRNA upstream 96483 20519861 ~ 20521808 (+) True G311471
TU368843 lncRNA upstream 142604 20473896 ~ 20475687 (+) True G311446
TU368844 lncRNA upstream 144494 20472823 ~ 20473797 (+) True G311447
TU368953 lncRNA downstream 41529 20662768 ~ 20665745 (+) True G311515
TU368955 lncRNA downstream 45028 20666267 ~ 20668273 (+) True G311516
TU368936 lncRNA downstream 61592 20682831 ~ 20685069 (+) True G311507
TU368933 lncRNA downstream 63928 20685167 ~ 20690740 (+) True G311506
TU368938 lncRNA downstream 145839 20767078 ~ 20804924 (+) True G311508
XM_026932980.2 mRNA upstream 15227 20596752 ~ 20603064 (+) True LOC113538122
XM_034314145.1 mRNA upstream 41931 20546892 ~ 20576360 (+) True ankrd52b
XM_026932618.2 mRNA upstream 79659 20534127 ~ 20538632 (+) True cnpy2
XM_026932419.2 mRNA upstream 111107 20495896 ~ 20507184 (+) True nab2
XM_026932420.2 mRNA upstream 111107 20495896 ~ 20507184 (+) False nab2
XM_026932903.2 mRNA downstream 12511 20633750 ~ 20650173 (+) True si:ch73-267c23.10
XM_026932838.2 mRNA downstream 32946 20654185 ~ 20661689 (+) True slc2a10
XM_026932837.2 mRNA downstream 32946 20654185 ~ 20661689 (+) False slc2a10
XM_034314152.1 mRNA downstream 210617 20831856 ~ 20860727 (+) True znf740a
XM_034314156.1 mRNA downstream 210617 20831856 ~ 20860727 (+) False znf740a
TU368156 other upstream 834378 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 834378 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 1101132 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 1530485 19087025 ~ 19087806 (+) True G310681
TU367679 other upstream 1926277 18687453 ~ 18692014 (+) False snrpe
XR_004580241.1 other downstream 249413 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile