RNA id: XM_026932419.2


Basic Information

Item Value
RNA id XM_026932419.2
length 2677
RNA type mRNA
GC content 0.54
exon number 7
gene id nab2
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20495896 ~ 20507184 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGGAAAGCTCTTTTTCGGTCAGATGGCGTGCCGCAGTCCGCCCCCACATTTCTCTCGCCCACACCAGCAGCAAAAAGACTCTCATTAACAACCCAGATCCTGCCAGCAAAAAGCAGCCAGGCAGGGACTCGGACGCTCCGAGACGAGCACTCCTCATTCTCATTGTTTACCTTAAAGTGgatttctataaatataaatatgctcGACTAGCGCTAGATAGTGCACATGATTCCGGAGAACTGATTCTACACTTGATTGCGGAGAATTAAGGCAGACTGCGCGTGTATCGAGGCGAGACTTGGTCTGGACGCAGACATGAAGCGTCGCGGTTTTATTCTGTAAGCACACAGACAGCCCCAGCCTGCTGAGAGAGGAACAAATCACCACCAGAGAAAGAAACTAAAAACAGGgcgaggagaggagaggagagaagagagagaggagaggagaggagaggagagaggagaggagagggaggaaaaaaaaataaatccagtttCCAGATCCCAGGGTTCGCCTGATCCGAATCCTGAGTCGGTTCTTTTGGTTGTACCATAGCAGCAGGAGGATGTCGGTGCCGCGGACGCTGGGTGAGCTGCAGCTGTACCGTGTGCTGCAGAGGGCCAACCTGCTCATGTACTACGACACCTTCATCCAGCAGGGCGGCGACGATGTGCAGCAGCTGTGTGAGGCCGGAGAAGAGGAATTCCTCGAGATCATGGCTCTGGTCGGGATGGCCACGAAGCCCCTGCACGTGCGCCGCTTGCAGAAAGCCCTGCGCGACTGGGCCGCTAATCCCGCCGTCTTCAACCAACCCCTGACCACGGCCATGGGAGGAATCCCGCTTTTTAAAATCGATAGCACCATGGGCCCGAGGAAATCCTTAAGCAACGGGCAGCCAGCATCCCCATGCGACAGGGAAGATCAGGGAGCTTGTCTGACTCCGCTCCGAGATAACGGCAGTCCGAGGAGCCCGTGCTCCCAGGCATCGCCGCTTCCTCCAGATCATCATCTTTACAGGGACAAACTGTCCCCCATGGAGCCTCACTGGCTCAGTCCGGAATTAGACGGGAACGGAGCAGAGGAAGACCAGCCCAGTCCGCCTTTGCCTCTTTTGGTCCACTCCAGGAACACAGGTCCCTCGACGCCTCCCACAtcttcctcctcgtcctcctccccTTGGCCTGGAGGACAGCTGGATGCAGACACGGTGAAGGCGGTAGGGGAAAGCGTGGAGCGTCTGTTCAGGACGGTGCCGCACACAGACCCGGCCGAGGTGAAGAGTCTCCTCAGGCTGAATAAGAAGATGGCCAAGACGGTGGGTCACATTTTCAACATGGAGCCACACGACAAGAGCAAAGAGGAGGAGATCCGCAAATACAGCCTCATCTACGGCCGCTTCGACTCCAAGAGGAGGGAGGGCAAGCAGCTGACACACCACGAGATGATCATCAACGAAGCGGCGGCGCAGTTCTGCATACGCGACAACGCGCTGTTATTGAGACGGGTGGAGCTTTTCTCACTGGCGCGTCAGGTGGCGAGGGAATGTGCCTACACCTCCACGCTGAAACACAGCAGGACCAGCTCTGAGGACTGTACCAATTCCTTTACAGACAACAGCGTTCCGAAAAGAATCAAACTCGAGGTCACAGATTCAGACAGTATCAACCTGGTACGCGGATCGAAAAGCGCTGACGCGGCGATTCACGGCAGCCTCAGGTCGGCGGCAGACGACGACAGCCTGTCAGGAGAAAGTCTGGACAGTTTATCTCACGATGTAGGGCCTCACTCTCTCCCCTCGTCATCCCCCCGTCCCCTCGCCGACACCATCGGCCCCGTCACCTGGAGTCGCCAGCTCATGCAGCAAACGCTCATGGACGAGGGCCTGCGATTGGCTAGAATGGTGTCACGTGACCACACGGCCAAGGTCAGCCTAGGGTCAGAGAAGAGACAGACTTCAGAGCCGGAGGGCCGAGCATCAGACAGACGAGGCTTAAACGCGTCCCACCAGAGCAGCAGCCCTGCCAGCACCAAAGACGACCCTTAAAGGGACACCAGCAGGAGCCAGAAGTTGCCTTGCTGCTCAACTCAGGTCTCATACGACTCGAACCCTCCGGAGATTTTCACACCTGCTTTCCCAAAACTGTCTCATGTAGTTAGCACCTCACAGGTCCAGTGTTAGACTGTTCTTCTATTGTGAGTCAGTGGCTGGATGAAGATGTGTGTTGTAGATCAGATTTGGTTGGGAATGGTCCGAGTTCAGTACAGTTCAGTGAATTCCCAGGTCACTGAGGGGGAGTGTCTCAATACAGGATTAATGATCTGATGTATGATAgacacatttaatcatttaatcacatttccatcGTTACATACAATACAACTTAGAGCTGTTCTGCTGCAATACAATGCACTGCAATACAGTAATTATGTAaagcagcacaaacacacacacacacacacacacaaattaatacTAATGAAATAATGCAGCAATACATTTGACTGCTCttaggcacagaggccacaccgaTTTTTACTGGTCAAGCCTCCTGCTTTTAGACTAaaaagcacagaggccacgcctcctttcattggactgacaggcacagaggccacgcctcctttcatTGGACTGactggcacagaggccacgcctcctttcatTGGACTGa

Function

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K22388 NAB; NGFI-A-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU368843 lncRNA upstream 20209 20473896 ~ 20475687 (+) True G311446
TU368844 lncRNA upstream 22099 20472823 ~ 20473797 (+) True G311447
TU368810 lncRNA upstream 79717 20415584 ~ 20416179 (+) True G311414
TU368803 lncRNA upstream 99610 20395754 ~ 20396286 (+) True G311407
TU368791 lncRNA upstream 119198 20376013 ~ 20376698 (+) True G311395
TU368880 lncRNA downstream 12677 20519861 ~ 20521808 (+) True G311471
TU368860 lncRNA downstream 36837 20544021 ~ 20544553 (+) True G311460
TU368841 lncRNA downstream 72769 20579953 ~ 20583595 (+) True G311444
TU368953 lncRNA downstream 155584 20662768 ~ 20665745 (+) True G311515
TU368955 lncRNA downstream 159083 20666267 ~ 20668273 (+) True G311516
XM_026932881.2 mRNA upstream 30346 20458293 ~ 20465550 (+) True akr7a3
XM_026932666.2 mRNA upstream 110237 20288995 ~ 20385659 (+) False kcnab2a
XM_026932618.2 mRNA downstream 26943 20534127 ~ 20538632 (+) True cnpy2
XM_034314145.1 mRNA downstream 39708 20546892 ~ 20576360 (+) True ankrd52b
XM_026932980.2 mRNA downstream 89568 20596752 ~ 20603064 (+) True LOC113538122
XM_026932496.2 mRNA downstream 111107 20618291 ~ 20621239 (+) True LOC113537838
XM_026932903.2 mRNA downstream 126566 20633750 ~ 20650173 (+) True si:ch73-267c23.10
TU368156 other upstream 711983 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 711983 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 978737 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 1408090 19087025 ~ 19087806 (+) True G310681
TU367679 other upstream 1803882 18687453 ~ 18692014 (+) False snrpe
XR_004580241.1 other downstream 363468 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile