RNA id: TU368810


Basic Information

Item Value
RNA id TU368810
length 244
lncRNA type inter_gene
GC content 0.59
exon number 2
gene id G311414
representative True

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20415584 ~ 20416179 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTCGCAGGTCTTGCCATCCTCCGTCAGGTTGAAGCCGGGACGACAGTCGCAGTAGGTGCTGCCTCCATCGCTGCGGCACTCCTGAGAACAGCCACCGTTCCACAGCGAACACGGGTTCTCcaggGTGCAGTGTTTGCCATCCTCCGCCAGTCTGTAGTTGGGTCGACAGCGGCACTGGAACTGAACCGCTGACTGCTGGATGCAGAAGTGTTCACACCCTCCATTACTGATGCCACACAAGTt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU368803 lncRNA upstream 19298 20395754 ~ 20396286 (+) True G311407
TU368791 lncRNA upstream 38886 20376013 ~ 20376698 (+) True G311395
TU368607 lncRNA upstream 238312 20119383 ~ 20177272 (+) False errfi1a
TU368619 lncRNA upstream 305360 20109961 ~ 20110224 (+) True G311246
TU368604 lncRNA upstream 344225 20070973 ~ 20071359 (+) True G311232
TU368844 lncRNA downstream 56644 20472823 ~ 20473797 (+) True G311447
TU368843 lncRNA downstream 57717 20473896 ~ 20475687 (+) True G311446
TU368880 lncRNA downstream 103682 20519861 ~ 20521808 (+) True G311471
TU368860 lncRNA downstream 127842 20544021 ~ 20544553 (+) True G311460
TU368841 lncRNA downstream 163774 20579953 ~ 20583595 (+) True G311444
XM_026932666.2 mRNA upstream 29925 20288995 ~ 20385659 (+) False kcnab2a
XM_026932881.2 mRNA downstream 42114 20458293 ~ 20465550 (+) True akr7a3
XM_026932419.2 mRNA downstream 79717 20495896 ~ 20507184 (+) True nab2
XM_026932420.2 mRNA downstream 79717 20495896 ~ 20507184 (+) False nab2
XM_026932618.2 mRNA downstream 117948 20534127 ~ 20538632 (+) True cnpy2
XM_034314145.1 mRNA downstream 130713 20546892 ~ 20576360 (+) True ankrd52b
TU368156 other upstream 631671 19768990 ~ 19783913 (+) False vamp3
TU368157 other upstream 631671 19768990 ~ 19783913 (+) False vamp3
TU368136 other upstream 898425 19508255 ~ 19517159 (+) False phf13
TU367971 other upstream 1327778 19087025 ~ 19087806 (+) True G310681
TU367679 other upstream 1723570 18687453 ~ 18692014 (+) False snrpe
XR_004580241.1 other downstream 454473 20870652 ~ 20882365 (+) False hnrnpa1a

Expression Profile