RNA id: TU397971


Basic Information

Item Value
RNA id TU397971
length 347
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G336078
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 440439 ~ 440785 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAGAAGCCGCCATTCAGCTAGCCGGGCTAGCCTTGTTTCgtgccgacagaaacacagctctgtgcggtaaggctcgcggtaaggctcgcggcggcggcttgtgtgtttacatcaacacggaatggtgcaagaactcggtgctagtctctagttactgctcatcgctggtggagtttatgactgttagatgtagacctttttatttaccacgggaattcactaCTGTTTTCATAATCGGTGTctacattccccccagtgctaacgctaatgctaaggaggcgctctgtgaactgtatggggctattagcgagctgcagaattctcaccctgacggactgtttattgt

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU397931 lncRNA upstream 35996 354030 ~ 404443 (+) True G336041
TU397903 lncRNA upstream 169556 213146 ~ 270883 (+) True G336016
TU397772 lncRNA upstream 295968 127038 ~ 144471 (+) True G335897
TU397771 lncRNA upstream 297909 125194 ~ 142530 (+) True G335896
TU397762 lncRNA upstream 386622 50894 ~ 53817 (+) True G335887
TU398008 lncRNA downstream 152531 593316 ~ 593539 (+) True G336111
TU398027 lncRNA downstream 173487 614272 ~ 620153 (+) True G336126
TU398012 lncRNA downstream 181947 622732 ~ 626949 (+) False G336115
TU398013 lncRNA downstream 181947 622732 ~ 626949 (+) False G336115
TU398015 lncRNA downstream 181947 622732 ~ 626949 (+) True G336115
XM_034298752.1 mRNA upstream 823 428318 ~ 439616 (+) True LOC117595878
XM_034298634.1 mRNA upstream 46249 393549 ~ 394190 (+) True LOC117595858
XM_034298633.1 mRNA upstream 59344 380151 ~ 381095 (+) True LOC117595857
XM_034298632.1 mRNA upstream 64338 375477 ~ 376101 (+) True LOC117595856
XM_034298631.1 mRNA upstream 80538 358957 ~ 359901 (+) True LOC117595855
XM_034298637.1 mRNA downstream 44431 485216 ~ 496318 (+) True LOC117595859
XM_034298760.1 mRNA downstream 98903 539688 ~ 540721 (+) True LOC117595881
XM_034298757.1 mRNA downstream 120493 561278 ~ 562318 (+) True LOC117595880
XM_026917894.2 mRNA downstream 219083 659868 ~ 664194 (+) False LOC113528990
XM_026917893.2 mRNA downstream 219084 659869 ~ 664284 (+) True LOC113528990
TU397921 other upstream 153224 286849 ~ 287215 (+) True G336034
TU398067 other downstream 298584 739369 ~ 749674 (+) True G336161
TU398091 other downstream 353332 794117 ~ 794695 (+) True G336172
TU398147 other downstream 532884 973669 ~ 976321 (+) True G336213
TU398245 other downstream 692203 1132988 ~ 1136107 (+) False mllt11
TU398302 other downstream 829024 1269809 ~ 1335530 (+) False G336334

Expression Profile