RNA id: TU397771


Basic Information

Item Value
RNA id TU397771
length 359
lncRNA type inter_gene
GC content 0.62
exon number 2
gene id G335896
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 125194 ~ 142530 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggttgatgtgccaagtgaggtggcggcctcttaggtctgggagaaagtgtttcagagctagaaacacggccagcatctccaggcggttgatgtgccaagtgagatggcggccgctccacagaccacgggcaggacggccactcatgaccgctccccatccggtgagggacgcatccgtcgctagcactacgcggcgaccaggagctcccaggaccgggccctgagacaagaacccaggttctctccacacagctaaggcacggcggcatcgccgcgtgaccttgatcatgcggagcgggtttcctctgtttcggaaaaaccccctggtcttgagccaccactgtaggggtctcatgtgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU397762 lncRNA upstream 71377 50894 ~ 53817 (+) True G335887
TU397757 lncRNA upstream 71416 50894 ~ 53778 (+) False G335887
TU397751 lncRNA upstream 95046 29943 ~ 30148 (+) True G335882
TU397740 lncRNA upstream 104186 14878 ~ 21008 (+) True G335876
TU397903 lncRNA downstream 70616 213146 ~ 270883 (+) True G336016
TU397931 lncRNA downstream 211500 354030 ~ 404443 (+) True G336041
TU397971 lncRNA downstream 297909 440439 ~ 440785 (+) True G336078
TU398008 lncRNA downstream 450786 593316 ~ 593539 (+) True G336111
TU398027 lncRNA downstream 471742 614272 ~ 620153 (+) True G336126
XM_026918350.2 mRNA upstream 36679 55108 ~ 88515 (+) True fkbp10a
XM_026918018.1 mRNA downstream 37286 179816 ~ 180757 (+) True LOC113529063
XM_034298627.1 mRNA downstream 49423 191953 ~ 192894 (+) True LOC113529056
XM_026918017.1 mRNA downstream 62194 204724 ~ 205665 (+) True LOC113529062
XM_026918016.2 mRNA downstream 83223 225753 ~ 226697 (+) True LOC113529061
XM_026918015.1 mRNA downstream 86531 229061 ~ 230002 (+) True LOC113529060
TU397921 other downstream 144319 286849 ~ 287215 (+) True G336034
TU398067 other downstream 596839 739369 ~ 749674 (+) True G336161
TU398091 other downstream 651587 794117 ~ 794695 (+) True G336172
TU398147 other downstream 831139 973669 ~ 976321 (+) True G336213
TU398245 other downstream 990458 1132988 ~ 1136107 (+) False mllt11

Expression Profile