LOC113529062 (LOC108256868,LOC108256847,LOC108256843,LOC108256846,LOC108262172)


Basic Information

Item Value
gene id LOC113529062
gene name LOC108256868,LOC108256847,LOC108256843,LOC108256846,LOC108262172
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 204724 ~ 205665 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918017.1
ATGGACTTTACTAATGTTACATATTTAACACTAGAGGGACATGTGGATTTACAGAATTAtagatatgtttattttttaatcactcTCACTGTGTACATATCTATCATTGTATTTAATACTGttgtcatttttgtcatattcatGAACAAACGTCTCCATGAGCCCATGTACATGTTCATTGCTGCTTTGCTTTGTAATGCTCTCTTTGGAGCGACTTCTCTTTATCCTAAACTGCTCACTGATTTACTGGCTGACAAACAAATTGTGTCTTATGAAGTGTGCTTGCTTCAGGCATTTTGCATGTACACATATGCTTCAGCAGAGTTTGCGCTGTTATCAGCTATGGCCTATGACAGATATGTGTCCATCTGTAAACCATTACAATATGCAACTATTGTAAAAATGACCACTGTCAGAAAGCTCTTATTTTTATCATGGTTTTTGCCAAGCTGTGAAATTGGTATATCTGTTATACTAGCAGCCCAACTTCCgctgtgtaaatttaaattaaacagaataTATTGTGGTGGTTACTCCATTATTAAATTAAGTTGTAGAGAAACATCTGTGAACAACATATATGGACTTTTTGCTTTCTGCATTGCTGTATTTCCACCAATGATCTTCATAATCTATTCGTATTTCCGAATACttgctgtgtgtttaaagaaTTCTAAAGATTTCAGAAGAAAAGCTCTACAGACCTGTTTACCACATCttctcattttcattaatttttctgtgaacatttgttttgaaattataaataacagACTAGAAACAAATCAAATTCCCCACATTATTGCCATGATCCTGTCAGTTGAATATTTACTCATTCCTCCTTTATTCAATCCCATAATATATGGATTAAAACTGCAAGAGATTTTGAAAAACATCAAGAGAATGTTTTCATGGAAAAAGAGGACAGGGGTTTCTTTTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918017.1 True 942 mRNA 0.33 1 204724 205665

Neighbor

gene id symbol gene type direction distance location
LOC113529056 LOC108262172 coding upstream 11830 191953 ~ 192894 (+)
LOC113529063 LOC108256844,LOC108256868,LOC108256846,LOC108262172 coding upstream 23967 179816 ~ 180757 (+)
fkbp10a LOC108257211 coding upstream 116209 55108 ~ 88515 (+)
LOC113529061 LOC108256842,LOC108256840,LOC108256799,LOC108262172 coding downstream 20088 225753 ~ 226697 (+)
LOC113529060 LOC108262172 coding downstream 23396 229061 ~ 230002 (+)
LOC113529059 NA coding downstream 31773 237438 ~ 240428 (+)
LOC113529058 LOC108256799,LOC108262172 coding downstream 50541 256206 ~ 257150 (+)
LOC117595853 LOC108256799,LOC108256839 coding downstream 76828 282493 ~ 283422 (+)
G335897 LOC107737118 non-coding upstream 60253 127038 ~ 144471 (+)
G335896 NA non-coding upstream 62194 125194 ~ 142530 (+)
G335887 LOC108257212 non-coding upstream 150907 50894 ~ 53817 (+)
G335882 NA non-coding upstream 174576 29943 ~ 30148 (+)
G335876 NA non-coding upstream 183716 14878 ~ 21008 (+)
G336016 NA non-coding downstream 7481 213146 ~ 270883 (+)
G336041 NA non-coding downstream 148365 354030 ~ 404443 (+)
G336078 NA non-coding downstream 234774 440439 ~ 440785 (+)
G336111 NA non-coding downstream 387651 593316 ~ 593539 (+)
G336126 NA non-coding downstream 408607 614272 ~ 620153 (+)
G336034 NA other downstream 81184 286849 ~ 287215 (+)
G336161 LOC108257052 other downstream 533704 739369 ~ 749674 (+)
G336172 NA other downstream 588452 794117 ~ 794695 (+)
G336213 NA other downstream 768004 973669 ~ 976321 (+)
mllt11 mllt11 other downstream 927290 1132955 ~ 1136124 (+)

Expression


Co-expression Network