G335876


Basic Information

Item Value
gene id G335876
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 14878 ~ 21008 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU397740
CTTACTCCGGCCTTATTAAGTCGCAACTCCTGAGGTTCCATCGCATATGCACCCGGGAACAGGACTTCACAGAAGCGACGCAAACCCTCTTTAAAGCACTCAGGCCCAGAGGATATAATAGGTCCTTCTTGAGGAAGGTTTTTAAATCCTACCGGACAAGAGGGACCCCGGCAGAGGGCACCAGCGTGCCCCTCGTCCTGACATTCTCCTCGGCCGCTCTGAAACTGACCAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU397740 True 234 lncRNA 0.54 2 14878 21008

Neighbor

gene id symbol gene type direction distance location
fkbp10a LOC108257211 coding downstream 34100 55108 ~ 88515 (+)
LOC113529063 LOC108256844,LOC108256868,LOC108256846,LOC108262172 coding downstream 158808 179816 ~ 180757 (+)
LOC113529056 LOC108262172 coding downstream 170945 191953 ~ 192894 (+)
LOC113529062 LOC108256868,LOC108256847,LOC108256843,LOC108256846,LOC108262172 coding downstream 183716 204724 ~ 205665 (+)
LOC113529061 LOC108256842,LOC108256840,LOC108256799,LOC108262172 coding downstream 204745 225753 ~ 226697 (+)
G335882 NA non-coding downstream 8935 29943 ~ 30148 (+)
G335887 LOC108257212 non-coding downstream 29886 50894 ~ 53817 (+)
G335896 NA non-coding downstream 104186 125194 ~ 142530 (+)
G335897 LOC107737118 non-coding downstream 106030 127038 ~ 144471 (+)
G336016 NA non-coding downstream 192138 213146 ~ 270883 (+)
G336034 NA other downstream 265841 286849 ~ 287215 (+)
G336161 LOC108257052 other downstream 718361 739369 ~ 749674 (+)
G336172 NA other downstream 773109 794117 ~ 794695 (+)
G336213 NA other downstream 952661 973669 ~ 976321 (+)
mllt11 mllt11 other downstream 1111947 1132955 ~ 1136124 (+)

Expression


Co-expression Network