LOC113529056 (LOC108262172)


Basic Information

Item Value
gene id LOC113529056
gene name LOC108262172
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 191953 ~ 192894 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034298627.1
atggaTTTTACTAATGTTACATATTTAACACTTGATGGACATGTGGATTTACAGAATTAcagatatgtttattttttaattactctCACAGTGTACATATCAATCATTGTATTTAATACTGTTGTAATTTTTGTCATATTCATGAACAAACATCTCCATGAGCCCATGTACATATTTATTGCTGCTTTGCTTTGTAATGCTCTCTTTGGAGCGACTTCTCTTTATCCTAAACTGCTCATTGATTTACtgtctgaaaaacaaatcacTTCTTACCACAGCTGTTTATTTCAGGCTTTTTTTGTTTACGCATATGGTGCATCAGAGTTCGTGCTGTTATCAGCTATGGCCTATGACAGATATGTGTCCATCTGTAAACCATTACATTACTcaaatattgtaaaaatgtcCACTGTCAGAAAGCTCTTATGTTTTTCATGTTGTAGAGAAATAGCTCTTAATAACTTTTATggactttttattttcatcattgcTGTATTTCCACCATTGATCTTCATAATCTTCTCATATATCAGGATACttgctgtgtgtttaaagaaTTCTAAAGATTTCAGAAGAAAAGCCCTCCAGACATGTTTACCACATATGCTTATTGTCATCATTTTTTCTGTTAacatttgttttgaaatgatAAATAACAGACTAGAATCACATCAAATTCCCCACATTATTGCCATGATCATGTCAGTTGAATTTTTACTTATTCCTCCTTTATTCAATCCCATAATATATGGATTAAAACTGCAGGAGATTTTGAAAAGCATCAAGAGACTGATTTCATGGAAAAAGAGGACTGGTGTTTCTTTTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034298627.1 True 828 mRNA 0.32 2 191953 192894

Neighbor

gene id symbol gene type direction distance location
LOC113529063 LOC108256844,LOC108256868,LOC108256846,LOC108262172 coding upstream 11196 179816 ~ 180757 (+)
fkbp10a LOC108257211 coding upstream 103438 55108 ~ 88515 (+)
LOC113529062 LOC108256868,LOC108256847,LOC108256843,LOC108256846,LOC108262172 coding downstream 11830 204724 ~ 205665 (+)
LOC113529061 LOC108256842,LOC108256840,LOC108256799,LOC108262172 coding downstream 32859 225753 ~ 226697 (+)
LOC113529060 LOC108262172 coding downstream 36167 229061 ~ 230002 (+)
LOC113529059 NA coding downstream 44544 237438 ~ 240428 (+)
LOC113529058 LOC108256799,LOC108262172 coding downstream 63312 256206 ~ 257150 (+)
G335897 LOC107737118 non-coding upstream 47482 127038 ~ 144471 (+)
G335896 NA non-coding upstream 49423 125194 ~ 142530 (+)
G335887 LOC108257212 non-coding upstream 138136 50894 ~ 53817 (+)
G335882 NA non-coding upstream 161805 29943 ~ 30148 (+)
G335876 NA non-coding upstream 170945 14878 ~ 21008 (+)
G336016 NA non-coding downstream 20252 213146 ~ 270883 (+)
G336041 NA non-coding downstream 161136 354030 ~ 404443 (+)
G336078 NA non-coding downstream 247545 440439 ~ 440785 (+)
G336111 NA non-coding downstream 400422 593316 ~ 593539 (+)
G336126 NA non-coding downstream 421378 614272 ~ 620153 (+)
G336034 NA other downstream 93955 286849 ~ 287215 (+)
G336161 LOC108257052 other downstream 546475 739369 ~ 749674 (+)
G336172 NA other downstream 601223 794117 ~ 794695 (+)
G336213 NA other downstream 780775 973669 ~ 976321 (+)
mllt11 mllt11 other downstream 940061 1132955 ~ 1136124 (+)

Expression


Co-expression Network