RNA id: XM_026918017.1


Basic Information

Item Value
RNA id XM_026918017.1
length 942
RNA type mRNA
GC content 0.33
exon number 1
gene id LOC113529062
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 204724 ~ 205665 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGACTTTACTAATGTTACATATTTAACACTAGAGGGACATGTGGATTTACAGAATTAtagatatgtttattttttaatcactcTCACTGTGTACATATCTATCATTGTATTTAATACTGttgtcatttttgtcatattcatGAACAAACGTCTCCATGAGCCCATGTACATGTTCATTGCTGCTTTGCTTTGTAATGCTCTCTTTGGAGCGACTTCTCTTTATCCTAAACTGCTCACTGATTTACTGGCTGACAAACAAATTGTGTCTTATGAAGTGTGCTTGCTTCAGGCATTTTGCATGTACACATATGCTTCAGCAGAGTTTGCGCTGTTATCAGCTATGGCCTATGACAGATATGTGTCCATCTGTAAACCATTACAATATGCAACTATTGTAAAAATGACCACTGTCAGAAAGCTCTTATTTTTATCATGGTTTTTGCCAAGCTGTGAAATTGGTATATCTGTTATACTAGCAGCCCAACTTCCgctgtgtaaatttaaattaaacagaataTATTGTGGTGGTTACTCCATTATTAAATTAAGTTGTAGAGAAACATCTGTGAACAACATATATGGACTTTTTGCTTTCTGCATTGCTGTATTTCCACCAATGATCTTCATAATCTATTCGTATTTCCGAATACttgctgtgtgtttaaagaaTTCTAAAGATTTCAGAAGAAAAGCTCTACAGACCTGTTTACCACATCttctcattttcattaatttttctgtgaacatttgttttgaaattataaataacagACTAGAAACAAATCAAATTCCCCACATTATTGCCATGATCCTGTCAGTTGAATATTTACTCATTCCTCCTTTATTCAATCCCATAATATATGGATTAAAACTGCAAGAGATTTTGAAAAACATCAAGAGAATGTTTTCATGGAAAAAGAGGACAGGGGTTTCTTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU397772 lncRNA upstream 60253 127038 ~ 144471 (+) True G335897
TU397771 lncRNA upstream 62194 125194 ~ 142530 (+) True G335896
TU397762 lncRNA upstream 150907 50894 ~ 53817 (+) True G335887
TU397757 lncRNA upstream 150946 50894 ~ 53778 (+) False G335887
TU397751 lncRNA upstream 174576 29943 ~ 30148 (+) True G335882
TU397903 lncRNA downstream 7481 213146 ~ 270883 (+) True G336016
TU397931 lncRNA downstream 148365 354030 ~ 404443 (+) True G336041
TU397971 lncRNA downstream 234774 440439 ~ 440785 (+) True G336078
TU398008 lncRNA downstream 387651 593316 ~ 593539 (+) True G336111
TU398027 lncRNA downstream 408607 614272 ~ 620153 (+) True G336126
XM_034298627.1 mRNA upstream 11830 191953 ~ 192894 (+) True LOC113529056
XM_026918018.1 mRNA upstream 23967 179816 ~ 180757 (+) True LOC113529063
XM_026918350.2 mRNA upstream 116209 55108 ~ 88515 (+) True fkbp10a
XM_026918016.2 mRNA downstream 20088 225753 ~ 226697 (+) True LOC113529061
XM_026918015.1 mRNA downstream 23396 229061 ~ 230002 (+) True LOC113529060
XM_026918014.2 mRNA downstream 31773 237438 ~ 240428 (+) True LOC113529059
XM_026918013.1 mRNA downstream 50541 256206 ~ 257150 (+) True LOC113529058
XM_034298628.1 mRNA downstream 76828 282493 ~ 283422 (+) True LOC117595853
TU397921 other downstream 81184 286849 ~ 287215 (+) True G336034
TU398067 other downstream 533704 739369 ~ 749674 (+) True G336161
TU398091 other downstream 588452 794117 ~ 794695 (+) True G336172
TU398147 other downstream 768004 973669 ~ 976321 (+) True G336213
TU398245 other downstream 927323 1132988 ~ 1136107 (+) False mllt11

Expression Profile