RNA id: TU397903


Basic Information

Item Value
RNA id TU397903
length 326
lncRNA type read_through
GC content 0.47
exon number 2
gene id G336016
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 213146 ~ 270883 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttatttgtatagcacttttttacAAAgctcattgtctcaaagcagctttacacaaacaaaagtaaagtgaagtgtgtgtgtgatgtctctgatgagcaagcagggcgacggtggcaaggaaaaactccctgagatggtgataggaagaaaccttgagaggaaccaggctcaacagagaacccatcctcatatgggtttacactgtagtgtgcgtgtgtgtgagtacaatgtgtgttggtgtagtccatggaaaacagctgaagcgttttcgtggcagtatgaagcattgccggtggacaggtccagagtgaagggggggaggtctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU397772 lncRNA upstream 68675 127038 ~ 144471 (+) True G335897
TU397771 lncRNA upstream 70616 125194 ~ 142530 (+) True G335896
TU397762 lncRNA upstream 159329 50894 ~ 53817 (+) True G335887
TU397757 lncRNA upstream 159368 50894 ~ 53778 (+) False G335887
TU397751 lncRNA upstream 182998 29943 ~ 30148 (+) True G335882
TU397931 lncRNA downstream 83147 354030 ~ 404443 (+) True G336041
TU397971 lncRNA downstream 169556 440439 ~ 440785 (+) True G336078
TU398008 lncRNA downstream 322433 593316 ~ 593539 (+) True G336111
TU398027 lncRNA downstream 343389 614272 ~ 620153 (+) True G336126
TU398012 lncRNA downstream 351849 622732 ~ 626949 (+) False G336115
XM_026918017.1 mRNA upstream 7481 204724 ~ 205665 (+) True LOC113529062
XM_034298627.1 mRNA upstream 20252 191953 ~ 192894 (+) True LOC113529056
XM_026918018.1 mRNA upstream 32389 179816 ~ 180757 (+) True LOC113529063
XM_026918350.2 mRNA upstream 124631 55108 ~ 88515 (+) True fkbp10a
XM_034298628.1 mRNA downstream 11610 282493 ~ 283422 (+) True LOC117595853
XM_026918008.1 mRNA downstream 58731 329614 ~ 330558 (+) True LOC113529054
XM_026918007.1 mRNA downstream 64848 335731 ~ 336675 (+) True LOC113529052
XM_034298629.1 mRNA downstream 74426 345309 ~ 346253 (+) True LOC117595854
XM_034298765.1 mRNA downstream 81835 352718 ~ 353438 (+) True LOC117595883
TU397921 other downstream 15966 286849 ~ 287215 (+) True G336034
TU398067 other downstream 468486 739369 ~ 749674 (+) True G336161
TU398091 other downstream 523234 794117 ~ 794695 (+) True G336172
TU398147 other downstream 702786 973669 ~ 976321 (+) True G336213
TU398245 other downstream 862105 1132988 ~ 1136107 (+) False mllt11

Expression Profile