RNA id: TU405838


Basic Information

Item Value
RNA id TU405838
length 1045
lncRNA type read_through
GC content 0.45
exon number 2
gene id G342589
representative True

Chromosome Information

Item Value
chromosome id NC_047617.1
NCBI id CM018563.1
chromosome length 20335669
location 12495042 ~ 12544734 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cgcgcacacacacacacacacccacagaGCGCACACTGTGTAACACTAGTTACATATGCACTTGTGGTCATATGAACCCCACACCAGGGGCACTGTCTAACACCTTAATAACCCCTTGTGCACGTATGCACGTATGCTCAGACATTCCAACAAACTCACATAGTGAACTGTGATGCAGTATTTGCAGTAAATACCCTGGAACCTCCTGACTAGGAGCTCTGGCAGTTATACAGTGTTCATAAAACCACAGTTGCATACTTAAATAGCATTCTTTTTCACTCCCCTGAACCACCAggataacatttattaacaatGTCATGAGAAACAAGACTCTGAGCTGCACAGAAAGATGCTCAGAGATGAGCTTTACAGCACTGGCAGGGACTAAGTTAACTTTGCAAAAACTGAAGAAGGTGCAAGATGATGCCCAAGTTGCAGCAGACCCTTCATGGAGAGGTAGGCCCATGAGGAGGAGGCTCTCCTTTTTGGTTAGTATATCACAGTAGGGTTTAGGAGTCCATTTTTTCGACCCACTGGGCTGCTTAGACATGAGAACACCCCTTTTCTTAATTGGTATAGCAGTTCAACAGCTGGCCTGAAGATTGAATGGCTGTCGTCCGGTCCAGATTACACTGCAGTAACACAGACTGAGCACAGCAAGAAACATTCTGTAGGCTCATTGTCGTTGAAAGCTACAGGGTCAATAGAATGATTGACAACATATGATATGACCTTGGGCAGAAAACCTagattcagccacaagagtcaCCTGGCTTCCAACACATACAAAGCAAGTTTATCATCAGAGCATACAACTCTACAGTTGTCTTAGCTGAAGTGATGAGTAGCAGGAAGGCACTTCTCAAAGATACCCACCTCAACGCCAACATGAGAAAGACATTTGCGACTCCAGCGCACAAGGGAGGTCCCATGTAGGGAACATGGCAGATGGAGGCATCTCGCTCCCTATAGAGAGACAATAATCCTATGAgactgaaatatatatacagtaccagtcaaaagtttggataCACCTTCTTATTCa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU405788 lncRNA upstream 18779 12474344 ~ 12476263 (+) True G342546
TU405780 lncRNA upstream 34824 12456707 ~ 12460218 (+) True G342538
TU405731 lncRNA upstream 106267 12387784 ~ 12388775 (+) True G342496
TU405730 lncRNA upstream 106436 12387784 ~ 12388606 (+) False G342496
TU405732 lncRNA upstream 106678 12387784 ~ 12388364 (+) False G342496
TU405899 lncRNA downstream 11535 12556269 ~ 12556480 (+) True G342617
TU405904 lncRNA downstream 103761 12648495 ~ 12648717 (+) True G342621
TU405912 lncRNA downstream 130407 12675141 ~ 12675351 (+) True G342627
TU405913 lncRNA downstream 132114 12676848 ~ 12677197 (+) True G342628
TU405914 lncRNA downstream 134381 12679115 ~ 12679330 (+) True G342629
XM_034298562.1 mRNA upstream 22163 12462745 ~ 12472879 (+) True si:dkey-166k12.1
XM_026929517.2 mRNA upstream 22163 12462771 ~ 12472879 (+) False si:dkey-166k12.1
XM_026930066.2 mRNA upstream 39185 12428895 ~ 12455857 (+) True pogza
XM_026930004.2 mRNA upstream 107848 12382783 ~ 12387194 (+) True anp32e
XM_026930182.2 mRNA upstream 147392 12340039 ~ 12347650 (+) True jtb
XM_026929831.2 mRNA downstream 12143 12556877 ~ 12606358 (+) True clasp2
XM_034298716.1 mRNA downstream 12143 12556877 ~ 12606358 (+) False clasp2
XM_026929842.2 mRNA downstream 12143 12556877 ~ 12606358 (+) False clasp2
XM_026929844.2 mRNA downstream 12143 12556877 ~ 12606358 (+) False clasp2
XM_026929833.2 mRNA downstream 12143 12556877 ~ 12606358 (+) False clasp2
XR_004577055.1 other upstream 679769 11810109 ~ 11815273 (+) False sostdc1b
TU405031 other upstream 1200686 11292324 ~ 11294356 (+) True smim12
TU405030 other upstream 1201012 11292324 ~ 11294030 (+) False smim12
TU404551 other upstream 2013072 10474483 ~ 10481970 (+) True G341451
TU403677 other upstream 3265606 9224640 ~ 9229436 (+) False bet1
TU405918 other downstream 147291 12692025 ~ 12695512 (+) False fabp3
XR_003403671.2 other downstream 241103 12785837 ~ 12792473 (+) True LOC113536228
XR_004577016.1 other downstream 359889 12904623 ~ 12951963 (+) False si:ch211-199g17.2
TU406031 other downstream 532436 13077170 ~ 13081229 (+) True G342718
TU407134 other downstream 1661002 14205736 ~ 14219690 (+) False slc30a8

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU318495 True 3426 lncRNA 0.39 2 NW_019170844.1 366321 ~ 376297 (+)