RNA id: XM_034299457.1


Basic Information

Item Value
RNA id XM_034299457.1
length 5232
RNA type mRNA
GC content 0.40
exon number 19
gene id itfg1
representative True

Chromosome Information

Item Value
chromosome id NC_047619.1
NCBI id CM018565.1
chromosome length 19570078
location 2020720 ~ 2174969 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCTGCCGTATTCCGGTTCGTGTAGTTTCATTCTATACTACAACAAGCAGGATGTGGCTCTCTACATATAGCGCGTTATTAGCgttaatttgttttcttttggttcGGCACGGCGCGTTTGGACTTCAGGACGTGACTGGAGATTTATTCGGGTCGGAAAATGTGGGCACAGTGGCCGCGTTTGGAGATTTTAACTCGGATAAACAAACTGATGTTTTCGTCATCAGAGAAGACTCGGAGCTGGTGATTTTCTTGGCTGATGTTAAAATTCCATATTTCAAACCCAAAGTGCATGTAAAGAAAGACGCATTTCCAAgTGGCGTCAGTGTGATCAGCAGTGTGGTTCCAGCTGATTATGATGGAGATTCTCAGATGGATGTTCTGCTCACTGGCCACGCGACAGGATCAGACCTGCAGCACACCAGCGTCTTCGTCTTCTGGGGGAACAACCAAACTCtgagtaataacacacacacacacacacacacacgatcacagTTCACTCGGGCTGGAAAGAATCATCTATCATTCACAAAAGGACAGAgaggaaagatggatggatggATTcctgatgtgtttgtgtttctcgGCTGCAGCTTTAACGGCGATATGATTCCGGATATTTTCGGAATGGTGGACGGATCCACAGAGGTCTGCTATCTCCATGGCAGGAAGCTGAAGTGTGAGAAAGCTCTTGGGTCAGACGTGCAGATCCGCGTTCCTCACTCCAACGCTTTCATCGATCTGAACAAGGACTTCACGGCTGaTTTGTTTCTCAGCACGAGATCAAAGTCGGGATTTGAGTTTGAGACGTGGATCAATACGGATGGAAACTTCACTAGGAACTACACAGCAAAGGCACCAGAGAACGTCAGACAAGTGGGCCAGTCTGCTTTCGTCGATTTTGATGGTGACGGTTCTCAGGATCATCTCCTGCCCGTCTGTATGGACGACGTGTGTACCAAAAGCGCCATTTACCTGGCAAAGCCTGGCCAGCCTGAGcTCTCTTGTATGAGGCCTGTAGCATCTGTGTTTCTGCCTCCCCAATCCAACACTAATtgccctgtgtctgtgtgtGTCCTGAAAAACACCAGCAACAGtgctCAGCAGCAGGCGTTTCTTCTGGAGAACGTGGCGTGTAATAACGTGAGCTGTAGAGACGTAGGACGTATGTTCCGCGTGCACTGGGACCAGTCGGACCTGAACGCCATCCCCAAAGCCGTCGTGGCCACGTTCTTCGACATCTATGAGGACGGAATTTTGGACATGATCGTGCTGAGCCGGACGGAGGGGAAGAAGGAGCTCACCATCCACGCTCTGAAGAACAACTTCGAGGCTGACGCTTATTTTGTCAAAGTGATTGTACTCAGTGGGCTGTGCTCTAATGACTGTCCTGACAAAGTGAAGCCGTTCGGTGTGAATCAGCCCGGTCCGTATGTCATGTACACGTCAGTGGACTCTAACGGCTACCTGAAGAACGCCTCAGcGGGTCAGCTGAGTCAGTCagcacatctctctctccagctcccCTACACCGTCCTGGGCCTCGGCCGCAGTGCCAACTTCCTGGATCACCTTTTCGTTGGCATTCCCCGACCCCCCGGAGTAAAGgagaTGAGGAAACAGGAATGGACCGCCATCATCCCCAACTCTCAGCTCATAGTCATTCCTTATCCAAACAGTGACCCtcgcagTTGGAGTGCTAAACTCTATCTGACTCCCAGTAATATTGTGTTGCTGACGGCCGTGGCGCTGAtcggagtgtgtgtttttatcctGATCATCATCGGTGTGCTGCACTGGCAGGAGAAGAAAGCAGACGACCGCGAGAAGAGACAGGAAGCTTATCGCTTCCACTTCGACGCCATGTGAAGAACCAGAGTGCATCATGGGAAGAATGAAGGTCCATCATAAGCATTCATCTCAATGgagagtttatttattaatttatttgatatGTTTTCCCCACTGGATATGATTTATCTGTTCCAGTTGAATGTGATATTGAATGTTGGAGATTTCGGGAAAGTGTGGCCGTTATTCCTCacttctgaattttttttctccttatatTTGTATATGATGGACGTTTACTTGAGCGTTACAACATTACAGGATGTGCTTATCGGTGAAGAGAACAGGGAGTATTGATTTTCATAAAAAGCAAATGAATGTTTCTGTGCCATTTTATTTGTCCTTCCGGCATAAAGtgttaaatgtatttctttctctGCTGGTGCAAAAGGGAAAAAGTGTGTCTCTTGCGCAAAAGAAAAAGACCAGGACCAGTTATGGGAGATTAGTCTTTATTTTTGGTGCTTGTTTTGATGTGCTTTAATAAAATGGCTGCACCAGTCATAGTTATCTGGCTTGCTCTTCAATGCCtatgaataaaactgaaaatctTTCCTGAGCtaatcaaaaaaacaaaacaaaacaaaaaaaaacacacattttattcatgCAGTTTGTACTTTCTTGGCTTCCTGTAAGAGCATGTTCCTTTTCCTCTTTGGCAAATGGTCTTCAATCATCTAAgaaatttgcttctttagttttgcactccAGCTAGTCAGTAATGGCACCTTACAGCCACCATTTTAGCATCACCATTCGTACATGAATAGTCTAATAAAACAGCAGATTTTGTAAAGCtccatattaaaaaaagtaaatatgcAAATCAAATTGGAAACATTATCATTTGAAACACTTCAGACATAAAATTCAGCCTTCAGACTTTGGGGAGTAGTGGTAATGTGAGCACTATGATACGAAACTTGAGCCAATGAGGAAAGAAGTTTCCTTTCGTAATGAAAACGGCACACTGGAAGTGCACACTAGGTGTCTGACCCATGACCTTTAATACCCTTTCTCCATTTTTATCAAACATGAAACACATATCAAATACAGAAACCATTGCAGTAAGTTCTGCCATTTTGGAATTGTGCAGATCACATGACAGTCATAAGAAAAGTTCCCTCTTTCTCTTACCTACAACTCATAATGCATAAACTCTGCTTAACAATTTATCCAGTCTGGACAATGGTTTCGTTAAATAAAGATGCAGTTTTTAGTGTTGATAGAAAGgcataactgttttttttttattattattttttattttacccaCGTTAGTGTAGACTTGACTTTAGTGCCAATAAGGAAAATTATTTGACTTCAAGATGGAGCTGTGCCTGTTTTTACTTCtgtcttttttgcttttctattaGTGTCAGAAATAACAAACAAGTTTACAACACTGAATAACTCCACAAAACTGTTTAagttggtgtgaatgtgtgatgatttagacatcCAGATTCCACAAAGCTAAACCTGAGGCTATAAGCTTCCATTTCttcttagctacattagcatcaaGGCTTCAGTGCAAAATTTAGAAAGCAAACGTATCTTGGCTATTATGCCATAAGTAAGAATTTGTGTACACTTCATATTTGGCCCaagttttcctttaagaatGGGATTTTTATTAATGCTAGTTTCATGCTCTCCGTTTAAGTAAAGCCAGTCACGTGCACAAATGAGAATATGATGGAATTTTATGCAGAATATTTCCCATCATGCCCTTTGGTCCAAACAGGTGTTCCTTCAGCTTCCACttacatacataataaaacatcaAACAATGCATCATTTTTGGTGGGGAAGTGGCAATAGAAATAGTCAGTGGTGAGATATGGATATGatttttgattgtgtgtgtgtgtgtgtttgaaaattTCCTgttaattgattattattaatagatttGTTAATAGCTCATAATGTCTAAAATGTCACGTTCCGGTCTTACTTTTAATTCAACTTTcactttattgctttattgAATTACCTGCTGTTTGCTGTGTGGAGGTCATTCCTGACTAATTCAATGTTAGCATTAACACTGGtattattgtttgtatttttggtgATTCTTAATTGTATAATAATCTTTGTACAATGTTGGGTTATGGGTGTGAATTAGATTCACTAATGATGAATTGTTCAGCTTGTGAATGGTTTTCATCATGCTGCATTAGTCAATACTTACAGATTAATATTATTGACTCTCATTtggcaaaataaacatttttatttatggagAACTTGCATGATAATAAACTCTAAAGCTGCTGTTGGTTTTCAGGACTAAACATTTCAGGTTCTTTCACAACTTTCAGTCTGTTTGCAGTGTCTGATTCAGAGCAAGTTGATATTATTTaccagtttattattattggtttgctttcacactgcacttaattaaatgaatcaaaaagcaaaaaaaaaattgtctgaggggtgtgtagggctgaaaacacCCTCACAAagctctttcattcattttcattcattcattagaaATACAGCAACAGAAATCATAGAAATCACAGAAAAGCATGGAGAACACGGAGCCAGCActtaataaatgattagataattatataaataactagtttaaaacaatTTGTGTATACAGCAgtcattttcactctttttgtTCGTAGGTCCAAATCTCTAGAATACTAGAGCATAGTGCATTTCTGGAgagctacagctctgtcctttggctcagtctGTCCTCgcagctcagtttagcagctcacacaaaaaataatgcTGTGTTCTTACCTGCCAAGGTTGGGAACACATCACGATTCCATTCACCCGGACTAAACACTGCGTATGTGGCACCCTTAGGGTgatttcatatatacagtattttgtccATTAAATAGATCCCTGGTgcaaaccctggagctgtagcactgcagaaaCCCCATGTGTTGTGGATACCAAGGAAGAAAACaagtaaaataaacactggacattacatgcaaaatgttttaaagtagtTACTTATATATTACCTCAGCAATTTATTGCACTTTGGTTGCTCTGTGTATTTAtcaataatgaataaaagagtTTCAGTAGGATGTTTTCATGTGTAGTGTGAAAGCAAACCAAACCATGtagcaaatgaaccaaaatTATCAATTTTCGCACTGATTCAGACTCTCAAAACAGATTAATGAGTATGAAAGTGCCCTTTGTGGTTAAAGTGGTCTGTGGCAGTGTTAATGGTGTAAGTGAAACTGGCATCTCTGTGGCCACAACATACTCTGGTATCTTTATGTTTCTAGGTCTATGATATCTATAACACATTTGTTTTGTCTGAACTGTATTgtaataaaatactttaaactGGATTATCTTTAA

Function

GO: NA

KEGG:

id description
K17257 ITFG1; integrin alpha FG-GAP repeat containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU425144 lncRNA upstream 17006 1997203 ~ 2003714 (+) True G358834
TU425132 lncRNA upstream 40126 1980220 ~ 1980594 (+) True G358828
TU425086 lncRNA upstream 92407 1925808 ~ 1928313 (+) True G358796
TU425010 lncRNA upstream 304833 1715546 ~ 1715887 (+) True G358726
TU425001 lncRNA upstream 412809 1607639 ~ 1607911 (+) True G358720
TU425171 lncRNA downstream 18194 2193163 ~ 2193423 (+) True G358858
TU425109 lncRNA downstream 146155 2321124 ~ 2386730 (+) False c25h16orf87
TU425110 lncRNA downstream 146155 2321124 ~ 2322314 (+) False c25h16orf87
TU425217 lncRNA downstream 191714 2366683 ~ 2366926 (+) True G358902
TU425218 lncRNA downstream 210329 2385298 ~ 2387176 (+) True G358903
XM_026937736.2 mRNA upstream 587402 1303881 ~ 1433318 (+) True cdh8
XM_026937737.2 mRNA upstream 587402 1303881 ~ 1433318 (+) False cdh8
XM_034299423.1 mRNA upstream 587402 1389832 ~ 1433318 (+) False cdh8
XM_026937569.2 mRNA upstream 1025489 953205 ~ 995231 (+) True cdh11
XM_026937706.2 mRNA upstream 1543748 466540 ~ 476972 (+) True tk2
XM_026937401.2 mRNA downstream 3009 2177978 ~ 2203598 (+) True LOC113540805
XM_026937615.2 mRNA downstream 112101 2287070 ~ 2298515 (+) True dnaja2a
XM_026937439.2 mRNA downstream 146163 2321132 ~ 2338762 (+) True c25h16orf87
XM_026937382.2 mRNA downstream 172852 2347821 ~ 2384488 (+) False mylk3
XM_026937380.2 mRNA downstream 178920 2353889 ~ 2384488 (+) True mylk3
XR_004577234.1 other upstream 116129 1890574 ~ 1904591 (+) True LOC117596061
TU424567 other upstream 1581834 426896 ~ 438886 (+) False cmtm4
TU424577 other upstream 1668951 348769 ~ 351769 (+) False ccne1
TU424578 other upstream 1668951 348769 ~ 351769 (+) False ccne1
TU424579 other upstream 1668951 348769 ~ 351769 (+) False ccne1
TU425115 other downstream 146202 2321171 ~ 2338758 (+) False c25h16orf87
TU425321 other downstream 461320 2636289 ~ 2664941 (+) False igdcc4
TU426380 other downstream 1548057 3723026 ~ 3729877 (+) False cylda
TU426382 other downstream 1566817 3741786 ~ 3745457 (+) False cylda
XR_004577248.1 other downstream 2411643 4586612 ~ 4764886 (+) False fto

Expression Profile