RNA id: XM_034300290.1


Basic Information

Item Value
RNA id XM_034300290.1
length 1247
RNA type mRNA
GC content 0.52
exon number 3
gene id LOC113524574
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 83803 ~ 92020 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGTGTTCAGGACATGTGATTGGCTAgctgtgaatttttttctaaagagTAGGAGGTGTTATCAGAGTGTACTCAGTGTCTGTTAACAGTTTTCTGAAGATGCTGAAGCAGACGACTTCCTGTAGCAGAGGTGATGCTAAAGCCATAAAGCTTTTGAAGTTTGGACCTCTAAGCTTATCTTCTATCTGTTCACACAGGAAATTCTGACGTCACTGTGAGGAGAACCGTGAGCGCGCGCCACTTCCTCTTTGGAGAGGCAGAAAGCGGAGGAGAGGAGCGGAGACTCGGGCATGATGTTGGACtctttgctgctgctgttgcagaAGATCTTCCTGTTTGCGCACTGGGACTTTTTCAGCGTCGTGGCATCGAGAGCCGACAAGCCGAGGCGCGCGGACAGGACGGACAGGACGGAGCGCGCGGGAGCGGAAGTCACGGCGCAGCTCGAGCGCGGAGATCTGCTCGAAGTTCCCCGCACGCTGTTCGTGCACTTCGGGATCTACTTGGGCGACGGGAAGGTGGCGCACCTCATCCCCGACATCCTTCCGCTGCTCACGCGCGATGAGCTCCGCGTCCGCGCCGTCGTGAGCAACAAGCGGCTGCTGCTGGGAGTGCTGTGCCGCAGAGCCGCCGTGCGCGTCGACACGCTCGAGGACTTCGTGTACGGGGCGCGCGTGCTGCTCATCAACGCCATGGACGGAGTGCTCGGTGTGCGGCCCGCGCCTAACGAGGAGGTCGCGCGCACGGCGGAAAAACTGATCGGCGCTGTTCGCTACAGCCTCCTGTGGAACAACTGCGAGCACTTCGTCACCTTCTGCCGATACGGTACCGGGATCAGCCTGCAGACCGACAAGTTTTGTGAGTGCCTGAAATCTGTTATCCGGGATCAGAGGAGTGTCCTGCTCACTACAGTCATCGGAATAATTTCCATATTGTTCGTGGGATTATCCGTATCCACAGCACTTCCTGTCCTTCTAATTTCCTTCATCCTCTGGATGGCCGGATAAGAGACTTTTATTATCGTGTCTACATCATGCTTCATTACATCTGTGTTCAGTTTAACACAGGTTTgccgaagtgtgtgtgtgtgtgtgtgtgtgttgtagtgagaTATCACTAAACTGTACTGACAGTGACTCAGTGCTGCtctaatatgtttatatgtttactgAAGTTTAACAGTTTTATGTTAATCACGTATGTTTTTGTACTCTACTCATTTAATGCTAATAAATGTTTAGAACTGA

Function

GO:

id name namespace
GO:0042572 retinol metabolic process biological_process
GO:0047173 phosphatidylcholine-retinol O-acyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU436777 lncRNA upstream 88139 179182 ~ 184646 (-) True G368685
TU436781 lncRNA upstream 94791 185834 ~ 193914 (-) True G368689
TU436775 lncRNA upstream 128341 219384 ~ 221756 (-) False si:dkeyp-75b4.8
TU436806 lncRNA upstream 153134 244177 ~ 244780 (-) True G368713
TU436824 lncRNA upstream 190396 281439 ~ 281903 (-) True G368725
XM_026910890.2 mRNA downstream 13 78214 ~ 83790 (-) True lratb.2
XM_034299999.1 mRNA downstream 15486 59037 ~ 68317 (-) False rbm46
XM_034300000.1 mRNA downstream 15603 59036 ~ 68200 (-) True rbm46
XM_026910891.2 mRNA downstream 38619 38735 ~ 45184 (-) True npy2rl
XM_026910858.2 mRNA downstream 59616 20946 ~ 24187 (-) True eif3f
XM_026910880.2 mRNA upstream 1092 92135 ~ 113740 (-) False LOC113524573
XM_026910879.2 mRNA upstream 1092 92135 ~ 113740 (-) False LOC113524573
XM_026910882.2 mRNA upstream 1092 92135 ~ 113740 (-) False LOC113524573
XM_026910881.2 mRNA upstream 1092 92135 ~ 113740 (-) False LOC113524573
XM_026910884.2 mRNA upstream 1092 92135 ~ 113261 (-) False LOC113524573
XR_004577324.1 other upstream 111611 202654 ~ 227102 (-) True si:dkeyp-75b4.8
TU437316 other upstream 820510 911553 ~ 915683 (-) True G369125
TU437448 other upstream 1184978 1276021 ~ 1276813 (-) True G369242
XR_004577318.1 other upstream 1450319 1541362 ~ 1599744 (-) False nrp2a
TU437816 other upstream 1701144 1792187 ~ 1795224 (-) True G369586

Expression Profile