RNA id: AMCG00000285


Basic Information

Item Value
RNA id AMCG00000285
length 4540
RNA type mRNA
GC content 0.51
exon number 34
gene id AMCG00000285
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9440061 ~ 9486689 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTACAGCGGCCTCTCTTTATTTAGGGCGCTGGCCGGCAGGGGGCGCTGCGGGCGTTCAGAGGCGGCCGAGCGAATCGCAGCGGGGCTCGGGAGATGACGTCACTTCCAGTGGCATGCAGCCCGTATGAATCGCACGGTGGATGAAGACGCGCAAGTGGAAAAAGTTATTTCTCTCAGATGTGTGCGGCCGCCGGCGCAATTAGCGCGTCTCTCGCCGTATGTGCGCCATTTTATTGAATCGGAGAGAAAGTGGACGCTACCCCCCCCTCCAGAAGTTGCACACCGGCGTCTAACCAGCTTATGCGCGAAAGGTGCCATTTTCCGTGCCGTCCGCCCTGCTGAATGGGACCCGAGTGGGATGCCCAAGCGGCCCGGCggtgtccgtgtccgtgtctGCGCTAACGGGGCCCCGGTGTGACGGAGGTGTCGTCGTCGGGAGGAAGTGACATTGATGACAGCGTCGGCGGCGAGGCGGAGTGCGGGCTGAGCCGAGCAGATGAGCGCCGTGTTGTTGATGGAGGTGGGTGACCGGGAGAGCCTTTTTGGATGATTAAAGCCTTTGGACTCGACGTCTGCTGAGCGCAAGAGACTGCGGAAAGTGCGCAGATGGAGGTCCTGAGCGCCGATTGCGCCAGATGAAGcagGAAATGGATAATAAGCCATAGTtggaaatataacattttctccTGTAAGAAAACGAGAAACTAGACAACAACAACGAAAACCTTCCGCAATCTGGATATCGTTTTAAATCCCATCCAAGCCACATTGCTATTGCATGTGAAAGACCCAAAGAAAGGAGCATGGATGCCCTTTCCCGGCCCAGCGGGGAGATCCAGAGGAGGAACCCCCAGCAGGACTTCGAGCTGGTCCAGAGAGTGGGCAGCGGCACCTATGGGGACGTCTATAAGGCCCGCAACATCCAGACAGGAGAGCTGGCAGCCGTCAAGATTATCAAACTAGAACCAgGTGATGACTTTTCCATCATCCAGCAGGAAATCTTCATGGTGAAGGAATGCACACACCAAAATATTGTGGCCTACTTTGGAAGCTACCTTTGCCGGGAGAAACTGTGGATTTGCATGGAGTACTGTGGTGGAGGCTCCCTCCAGGACATCTACCATGTAACTGGACCGCTTTCAGAGCCTCAGATCGCCTATGTCTGCAGAGAAACATTACAGGGCCTTGGCTATCTTCACTCCAAGGGTAAAATGCACCGAGACATCAAGGGAGCTAATATTCTGCTGACAGACAATGGGGATGTAAAGTTAGctgATTTTGGAGTTGCAGCCAAAATTACAGCAACCATTGCTAAGAGAAAGTCTTTTATTGGAACTCCTTACTGGATGGCTCCTGAGGTGGCAGCAGTGGAGAAAAATGGGGGCTATAACCAGCTGTGTGACATCTGGGCAGTGGGCATAACATCCATCGAGCTGGCCGAGTTGCAGCCCCCCATGTTCGACCTCCATCCCATGAGAgccttgtttttaatgtcaaagAGTAGCTTCCAGCCACCCAAgctaaaagacaaaacaaaatggTCTCCAGCCTTCCAAAACTTCATAAAAGTCTCCCTGACAAAGAACCCGAAGAAGAGGCCTACAGCAGAGAAGCTTCTCTCGCACGTGTTCGTAGCTCAGAATGGCCTTACCAGAAGGATGGCTGTGGAGCTTTTAGACAAAATGAACAACCCGGACAACCACCCCCACTACACTGAGGTGGACGATGACGACCTGGAGcccCTCTCTGCTGTTCGACACACCATTCGCTCTACAAACAAGAACGGCAGAGCAGAGAGGACTCGCTCAGAAATTAACTTTGACAAGGTGCAGTTTGAACCTCCGCTGAGAAAAGAGACCGAAGCTCACACAGAAATGGACTTGACCAAAGAGAATGACTTTCCGTCTCCTTGGAGTCCTTTCTCTGATGGAGGAATGAATAGCAAGAGCCTTCTCAAAAGCGTTGAGGAGGAGTTATTCCAACGTCGAGAAGGAATTGGGAAGGGCTGCAACTTGAAACATGAAGACGAGGGGGTTGCACATGTCTCGATAAGGAAGCAGGCGGGGGCAGGCAGCAAGCTGGTGGCCCGGTGCTGGGGACACGTTGCCCTTCTGGATGACACCTTTGAAGATGTGGATCTctCCACCTTGAAGCAAGGAGTCCCTCCCCCTCTACCTCCAAAGCCGCGGTTAAACAGCAACTCAGAAGAGGGGTGTCTGGACGAGGACAGGAGTCTGACAGTCCGGCGGCTCCCCAGCTCCGACAATGGGCCGACCCAGGGACTGCGCCGACTGAGTACCCCCGTACAGGGCAGCCAGGCTGAGCACTCCCCCCCCGGATACCTGTCTGCCAGCGTCAGCAGCCCCGGACTGCTCTCCCGCTCCACCGACCCAGACAACGAGGAGACGAACGCAGATGTGAACGGGGATAGCTCCAGACAGGCCCCCGCGCCTCCCCAGAGGAAAGAGAAGAAGGAGTTCCCTAAGCCAGCAATCAACGGGCTTCCACCAACACCCAAAGTTCTTATGGGCGCATGTTTTTCCAAAGTGTTTGATGGTTGTCCATTGAAGATCAACTGTGCTACATCTTGGATCCACCCTGATACTAAAGACCAATATCTAATCTTTGGGACAGAAGATGGGATTTATACTTTGAACTTGAACGAGTTGCACGAAGCTACTATGGAACAGCTCTTTCCAAGAAGATGCACATGGCTATATGTTATCAACAACAACTTAATGTCTTTATCAGGAAAAACCTTCCAGCTGTATTCCCACAACCTCATCGGGCTCTTTGAGCAGCTTAAGAAGCCGGGCCTGGCAGCTCAGTTCCAGACCCACAGGTTTCCTGATAAGATACTACCCAGGAGATTCGCATTAACAACTAAGATTCCTGATACAAAGGGCTGCCACAAGTGCTGCATAGTGAGAAATCCGTACACTGGGCACAAATACCTGTGTGGAGCCCTGCAGTCTGGGATTGTCTTACTTCAGTGGTACGAGCCGATGCAGAAGTTTATGCTGATAAAGCACTTTGACTTCCCCCTGCCCAGCCCTCTGAAGGTGTTTGAGATGCTGGTGGTGCCGGAACAGGAGTACCCCATGGTGTGCGTGGCCATCAACCAGGGCAGCGAGCCAGGACAGGTGGTGCGCTTCGAGACCATCAACCtcaactcctcctcctcctggtTCACCGAGATCGGCTCAGGAGGACACCAGGTCGATGCCATCCATGTGACGCAGCTGGAGAGAGACACGGTTCTGGTGTGCCTGGACATGTGCCTTCAGGACAGCGTGTTGGCTTTCTGGAAGCATGGCATGCAGGGGAAGAGCTTCAAGTCGAACGAGGCGAGTATTAGTGTTACCCAGGAGATCTCGGATCAAAGCCGGGTCTTCCATTTGCTGGGATCTGACAGggtggtagttctggaGAGTCGGCCCACAGACCACCCCACAGCCCTGAGCAATCTCTACATCTTGGCTGGCCATGAGAACAGTTACTAGACCCGCCGAGGCACCCTGTGAGGAGATGGCTCTTGCTGCCCATGTCCATTGATCCGCTTCCAGCTCTGATATATTCTCTGCAAGGAAAACATGACATGGAAAGGCAGTCTGCTTTTTCCTGTTGcttattttaatctgtgttgGCTTACTGCGGATGCAAAGAGGACAGCACTGGAGAGATGGGAACTGAGAAACCAGCCAAATTAAATTCCAGTAGACGAGAGTCCAATACCATAGTGCAGCCTCCAAGACGCTGCTCCACGGCATCGGCCTTATCCCCACCTGGATGTGCTGGAGCCGAGGCTGTGCTCAGACGGGGACAAACCAGCTGCGTCTCTGGATCTGCGACCTAGCTGCTACTGGAGAAGCCAGTCATGGGCCACTGTGTGGTCAGTCCGATCATGCAGCTTGACAAGAAGCTGTAAAGATGTAGCAGTTAGAGACAAATGAATGCAGAAAACGGTGGTGATGATATAAACACATGAATGCATTCAAGATCAGGTTTGAGAAAGTGCCATAAAAATCTATAAAGTTTTATTGTTTCCTCCATGCTTGTAAACTGCCAGTTTTAGATAGTAGTAGATAAAACGGACAAGCATTTTTTAGTGCAGTGTGGCTAAATTAACGCTAGCAACTGGGGGACTTTCATTCTGTAGAAATGTAGTTTACCAAACTGAAATGGAATGCATATGATAAGTTAATACCATTTTGTACAATGGAATATTTAAACCTTATTTATTAATCAGGCAGTAGTAGGGTATTGTTACTGTAGTTATCTTAATCGTGGACAGGGCCAGCCCTGCCGTCGACAGGGCTCGTAGCTCTTCCTCTGCTGACTAAGAGAAGGTTGCTGAGCAGCTTGggattattttacagctgtataAAATAGTTGCTTCTTCCTGCTTTGTTCTTTTTAGATTTTGAAtatatcatgtaaaatgtttaacttttttttaattgtaacttTTATTCCATATTTGCACCATGTAAGCACTTTTGTAtatctattgttttgttttgtattaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K04406 MAP4K3, GLK; mitogen-activated protein kinase kinase kinase kinase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187785 lncRNA upstream 154910 9280063 ~ 9285151 (+) True G149253
TU187686 lncRNA upstream 423910 9013371 ~ 9016151 (+) True G149172
TU187556 lncRNA upstream 766275 8668980 ~ 8673786 (+) True G149059
TU187553 lncRNA upstream 855094 8584488 ~ 8584967 (+) True G149056
TU187552 lncRNA upstream 856054 8583648 ~ 8584007 (+) True G149055
TU187903 lncRNA downstream 28133 9514822 ~ 9515600 (+) False AMCG00000286
TU187924 lncRNA downstream 74868 9561557 ~ 9573564 (+) False AMCG00000281
TU187938 lncRNA downstream 233258 9719947 ~ 9776988 (+) True G149359
TU188022 lncRNA downstream 471024 9957713 ~ 9962571 (+) True G149416
TU188017 lncRNA downstream 486359 9973048 ~ 9975172 (+) True G149415
AMCG00000277 mRNA upstream 12519 9414677 ~ 9427542 (+) True AMCG00000277
AMCG00000278 mRNA upstream 27729 9378563 ~ 9412332 (+) True AMCG00000278
AMCG00000274 mRNA upstream 76627 9355981 ~ 9363434 (+) True AMCG00000274
AMCG00000273 mRNA upstream 84913 9331536 ~ 9355148 (+) True AMCG00000273
AMCG00000271 mRNA upstream 283119 9121065 ~ 9156942 (+) True AMCG00000271
AMCG00000287 mRNA downstream 1228 9487917 ~ 9501368 (+) True AMCG00000287
AMCG00000288 mRNA downstream 15004 9501693 ~ 9508924 (+) True AMCG00000288
AMCG00000286 mRNA downstream 28680 9515369 ~ 9546411 (+) True AMCG00000286
AMCG00000280 mRNA downstream 70829 9557518 ~ 9560476 (+) True AMCG00000280
AMCG00000281 mRNA downstream 86500 9573189 ~ 9591088 (+) True AMCG00000281
TU187550 other upstream 858949 8579717 ~ 8581112 (+) False AMCG00000249
TU187300 other upstream 2077354 7359278 ~ 7362707 (+) False AMCG00000217
TU187301 other upstream 2077354 7361020 ~ 7362707 (+) True AMCG00000217
TU187267 other upstream 2143397 7290666 ~ 7296664 (+) True AMCG00000216
TU188032 other downstream 482635 9969324 ~ 9970801 (+) True G149424
TU188165 other downstream 1047901 10534590 ~ 10535137 (+) True G149525
TU188404 other downstream 2495771 11982460 ~ 11985715 (+) False AMCG00000352
TU188603 other downstream 3192981 12679670 ~ 12727903 (+) True G149859
TU188861 other downstream 4204150 13690839 ~ 13692589 (+) True G150069

Expression Profile