RNA id: AMCG00000381


Basic Information

Item Value
RNA id AMCG00000381
length 507
RNA type mRNA
GC content 0.53
exon number 5
gene id AMCG00000381
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12966877 ~ 13030853 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agatgTTGTACAGTGGGACAAAAACAGGCATTTCTAAAAGACTACAAAACGCAGCCTCTTGGGACATCGCGGCAGGAAGTGCGCCGGGGACGGGGTTTGATCTGCACATGCGCGCCTCAGCTCCTTCCTTTTCGATATCCGAGCGATAGAGACAAGATGGGTCACCAGCAGCTCTACTGGAGTCACCCTCGAAAATTCGGCCAGGGATCCCGATCCTGCCGAGTATGCTCTAACCGACACGGTCTGATCCGTAAATATGGGCTGAACATGTGCCGCCAGTGCTTCCGACAGTATGCTAAAGACATCGGCTTTTGCAAGGACCTCATTTTTCTGCCTCATCAGAAGGATGAGAGCACAGGGACACGCTGCAAACACAGAACAGAGCGGGCACAGCGCATGGCTGCCTGGCAACAGGGAAACAGTCAGTGGGCAGAGGATGTTCCTGCCCCAAACTGCGACTCTAAACGCTTCGAACAAATACCTGCCAACAGGTCTTATGAGCACTGA

Function

GO:

id name namespace
GO:0072332 intrinsic apoptotic signaling pathway by p53 class mediator biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0048821 erythrocyte development biological_process
GO:0006412 translation biological_process
GO:0001525 angiogenesis biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0001570 vasculogenesis biological_process
GO:0009790 embryo development biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02980 RP-S29e, RPS29; small subunit ribosomal protein S29e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188614 lncRNA upstream 125204 12833539 ~ 12841673 (+) True G149869
TU188432 lncRNA upstream 868505 12092387 ~ 12098372 (+) True G149747
TU188424 lncRNA upstream 939434 12027227 ~ 12027443 (+) True G149739
TU188352 lncRNA upstream 1166137 11800000 ~ 11800740 (+) True G149674
TU188351 lncRNA upstream 1166999 11799561 ~ 11799878 (+) True G149673
TU188827 lncRNA downstream 382012 13412865 ~ 13413064 (+) True G150042
TU188855 lncRNA downstream 618550 13649403 ~ 13650051 (+) True G150066
TU188905 lncRNA downstream 708923 13739776 ~ 13746116 (+) True G150106
TU189157 lncRNA downstream 1434039 14464892 ~ 14465302 (+) True G150303
TU189234 lncRNA downstream 1702379 14733232 ~ 14733440 (+) True G150364
AMCG00000367 mRNA upstream 18382 12943056 ~ 12948495 (+) True AMCG00000367
AMCG00000370 mRNA upstream 24511 12932611 ~ 12942366 (+) True AMCG00000370
AMCG00000369 mRNA upstream 46746 12898142 ~ 12920131 (+) True AMCG00000369
AMCG00000368 mRNA upstream 82552 12878438 ~ 12884325 (+) True AMCG00000368
AMCG00000376 mRNA upstream 141919 12790380 ~ 12824958 (+) True AMCG00000376
AMCG00000384 mRNA downstream 296539 13327392 ~ 13338022 (+) True AMCG00000384
AMCG00000385 mRNA downstream 321479 13352332 ~ 13409859 (+) True AMCG00000385
AMCG00000386 mRNA downstream 577900 13608753 ~ 13617625 (+) True AMCG00000386
AMCG00000387 mRNA downstream 587635 13618488 ~ 13626756 (+) True AMCG00000387
AMCG00000388 mRNA downstream 637036 13667889 ~ 13679929 (+) True AMCG00000388
TU188603 other upstream 238974 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 981162 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 2431740 10534590 ~ 10535137 (+) True G149525
TU188032 other upstream 2996076 9969324 ~ 9970801 (+) True G149424
TU187550 other upstream 4385765 8579717 ~ 8581112 (+) False AMCG00000249
TU188861 other downstream 659986 13690839 ~ 13692589 (+) True G150069
TU189044 other downstream 1102285 14133138 ~ 14153840 (+) True AMCG00000412
TU189714 other downstream 3905140 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 4514601 17545454 ~ 17548508 (+) True G150811
TU190029 other downstream 5123011 18153864 ~ 18159321 (+) True G150976

Expression Profile