RNA id: AMCG00000486


Basic Information

Item Value
RNA id AMCG00000486
length 2501
RNA type mRNA
GC content 0.43
exon number 13
gene id AMCG00000486
representative True

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 16280906 ~ 16291497 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCATAGGGACCCTGCTGGGAGAACAGTGCGGGAATTTCGGAGAGTGGGCATCGCTAAAGGGAAATAGCAAGACTAGAGAGGCACATTGCGCCAGAGAGTTTCTATTTGGTATATAACAAGATGCCTCCAAAAAGCAAGGCACCCGCTAAAGGCAAAGGCCCTGCAAAGAGAAAGCTAGCAGAGCAGTTTCCTCCAGGGGAGATACTGACAGACACCGGGAAGAAGCAGTGGAAGCTGGGAGCCCCCATTGGACAAGGGGGCTTTGGGGTGCTTTATTTGGCAAACGAAAGTGCATCCAAAACAGTTGGCAATGATGCACCTTATGTCATAAAAGTGgaacCGAGCGACAACGGACCACTGTTCTCTGAGCTGAAGTTCTACATGAGGGCTGCTAAACCAGATCTAATTCAGAGCTGGACCAAGTCACACAAGCTGAAGTACTTAGGAGTGCCAAAGTACTGGGGATCAGGTCTGCATGAGAAAGGAGGAAAGAGGTACAGGTTCATGGTAATGGACAGATTTGGTTCGGATctgcagaaaatgtttgaagaaAATGGGAAGCGCTTTCCCCGAAAAACAGTTCTGCAGCTCGGGCTGAGACTaCTTGACATTCTCGAATATATCCACGAACACGAGTACGTGCATGCCGACATCAAAGCCTCTAATCTTCTCCTTAGTCACAAGAATCCCAATCAGGTTTACTTAGTAGATTATGGACTGGCCTATAGGTACTCTCCAGAGGGTGTAATGAAGGACTACAAAGAAGATCCAAAGAGATGCCATGATGGGACCATTGAGTTTACCAGCATTGATGCACACAAGGGAGTATCTCCATCTCGACGAGGAGACTTGGAGATCCTGTGGTACTGTATGGTCCAGTGGCTGTGTGGATGCTTGCCATGGGAAGACAAACTCCAAGACCCCAACTATGTCAGAGATTCAAAGATCAAGTGCAGGGAGAACATCTCGGATTGTTTGTCCAAGTGTTTCTCTTCTAATGATAAGCCAGAGGAACTGGTGAAGTTCATGGAAGAAGTGAAGCCCCTGTCGTACGATGACAAGCCGCCCTATCAGAAGCTGCGAACCATTCTCCAGGCGGGACTGAAATCCATTGGTGCTGCCGACGATGACAAACTGGACTTCTCCCAGCCATTGAATGGAGCCGCTGCATCACCAGTGAAGAAGACCACCAAAAGAAAGAAGGTGGAGCAAAGAGTCAATtctgatgaggaggaggaggaagaggaggacgtTGTTCCcgcaaagaaaaagacaagttCCCCGGCGAAAAAAGGTGTAAATGGCTTGAAAAAAAAGGCTGCTCCCAAAAAGAAGCTGGTGGACACGAGCACCCAGACGTCCCCGCACACGGCGCCGGCAAGAGGGCGAGGGCGGCCCAAGAAGACCGCCTGAGGGCAGATACTTTCATTTCCTGACCTTGATGCCTTGTTAcaattttttgtctttttatgctTGATTGATCCACTTTGCTTCACCCCTTAGGAAATATTGTTTAgaattgggggtggggggtctttTTTGTGttctgatgtgttgtttttaaaaacttaaacctttcttaaataaatactggGAAACATTGATCATACTTGTTCATTTCATATCATGCAAACTATCAAGagatagaaacaaaaatatatcagcCTAAGGGTCATAGGTTTAGTGACACAGAAGTGCAAGCAAAGGGACATTTTTACTGAAGATGTTCACTGTATTactgcctttttgttttgcatgaaaGCAGTCATGAATTCTTATTTCCTCGTGTCTCAGAGATGCAAGCCGGTCCTTTGATACCGGTGTTGAAGCAGGCGAGTGTAGTGCACAGGGtctgttttgtggtttgttgCTGCTTCCCACTATTTGATCAAAAGTAGACAATGGGATGCTTGCCGTTTTCCTTTCATACTATTCAAATGATTTGTACCTGGATCTTCACCCACTGCTTTCTGTGTTTCctcttttgaaataaatgtcaaaacatcATTAAAAACCAAAGACAATGCAGTGACATGTGTAATGAGATGCTACCTACATTTTAATACTGTGACTTCATACATTAACcttagattattattaaaaaaaaaaaaaaacagatctttGCCACACCGTACTAATAAAATagagtaaaaacattttactttcaaccctttattttcattgtcagCTAAACAGTTGCTTTCTCGTGTTCACAGAGATTCCAGTGATCTGAATCTATCTTGGCGGATTCCAGTTTGCCTGCGCGTTTGACACTGCATTGAACTACCCCGACAGCTCGTGCCAAATTCTTCTGTGTTTGCAGATTCCATCCAccgaaaaataattaaaaccgaTGTGCAGAACTGAAATTAACTGACATAATTTGTAAAAGCATTAGGAATTATAACGGTTTGTCAAATTTCCACATCTGAATCTGACATTGCAATATCCAGggtcataataaaaatatatatatatatatatataaatcttaaGAGA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08816 VRK; vaccinia related kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU189578 lncRNA upstream 89885 16190820 ~ 16191021 (+) True G150642
TU189489 lncRNA upstream 661880 15615130 ~ 15619026 (+) False G150563
TU189487 lncRNA upstream 661880 15617015 ~ 15619026 (+) True G150563
TU189412 lncRNA upstream 981028 15295607 ~ 15299878 (+) True G150506
TU189381 lncRNA upstream 1030177 15250517 ~ 15250729 (+) True G150484
TU189631 lncRNA downstream 353631 16645128 ~ 16646915 (+) True G150686
TU189636 lncRNA downstream 356408 16647905 ~ 16649574 (+) True G150687
TU189633 lncRNA downstream 356568 16648065 ~ 16649574 (+) False G150687
TU189639 lncRNA downstream 390418 16681915 ~ 16722627 (+) True G150689
TU189674 lncRNA downstream 519956 16811453 ~ 16811983 (+) False AMCG00000514
AMCG00000490 mRNA upstream 48475 16216282 ~ 16232431 (+) True AMCG00000490
AMCG00000492 mRNA upstream 65435 16208705 ~ 16215471 (+) True AMCG00000492
AMCG00000491 mRNA upstream 72630 16198281 ~ 16208276 (+) True AMCG00000491
AMCG00000483 mRNA upstream 251745 16023883 ~ 16029161 (+) True AMCG00000483
AMCG00000489 mRNA upstream 522459 15752425 ~ 15758447 (+) True AMCG00000489
AMCG00000495 mRNA downstream 449187 16740684 ~ 16745744 (+) True AMCG00000495
AMCG00000512 mRNA downstream 504596 16796093 ~ 16801794 (+) True AMCG00000512
AMCG00000514 mRNA downstream 520336 16811833 ~ 16814365 (+) True AMCG00000514
AMCG00000513 mRNA downstream 523346 16814843 ~ 16849247 (+) True AMCG00000513
AMCG00000502 mRNA downstream 652563 16944060 ~ 16944477 (+) True AMCG00000502
TU189044 other upstream 2127066 14133138 ~ 14153840 (+) True AMCG00000412
TU188861 other upstream 2588317 13690839 ~ 13692589 (+) True G150069
TU188603 other upstream 3553003 12679670 ~ 12727903 (+) True G149859
TU188404 other upstream 4295191 11982460 ~ 11985715 (+) False AMCG00000352
TU188165 other upstream 5745769 10534590 ~ 10535137 (+) True G149525
TU189714 other downstream 644496 16935993 ~ 16938282 (+) True G150750
TU189794 other downstream 1253957 17545454 ~ 17548508 (+) True G150811
TU190029 other downstream 1862367 18153864 ~ 18159321 (+) True G150976
TU190161 other downstream 2125683 18417180 ~ 18419471 (+) False AMCG00000550
TU190212 other downstream 2250880 18542377 ~ 18565627 (+) True AMCG00000572

Expression Profile