RNA id: TU175621


Basic Information

Item Value
RNA id TU175621
length 2555
RNA type TUCP
GC content 0.36
exon number 4
gene id AMCG00002935
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 7062473 ~ 7066350 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGCGGATGTTTTAGACGCTGCTGACCTTATGATAAGGAGACGGCGAGGAGCGCTGGGACACCATAGGAGCAGACATGAGCTGCAAGACGCTGTCCAAAGCTGAGCTGTTAGCAGCCGTCTCTCTGGCCGCTGGGACCGCAGCTATTGGTTTCCTGGCCTATAAGACCTTTTTCTCCAAGGATAAGTGCTGCAAGGCCAGGGTCAACCTAGATATCCAGAAGGACAACCCGAAGGTGGTGCATGCCTTCGACATCGAGGACCTGGGAGAGAAGGCAGTATACTGCCGATGCTGGAGGTCTAAGAAGTTCCCATTGTGTGATGGTTCTCACACAAAGCACAATGAAGAAACCGGAGATAACGTTGGTCCTCTCATCGTGAAGAGAAAGGAAGCTTGAAAAATCACAAATGCGCTTCCCAAGAAAGCTGCTTGAGATGCACTATTGtttgcttgtagatgtataaatcTGATTGAAACCTAATTGCAAGGACCCTCTGTGCTAATGTGTACTATttacagtaccgtagcacatcATTGTTTCTCTTAATCTGTgaagtttgatttatttgtttaatcaaaaatGGGAATGTCACCTGTAGTCTTGGCATTGGTATCAGTCTGTTTAGCTGCTTTCAAAACGGGTCTGTCTTCATAATTCTCCAAAGAGGGGCTTcttaagtgttttgtttcagattaaTTGCATTCATAGCTGAGGAAAGAATTTTTGCAAACCACTGTGAACTGTAACCAGTAAACCATGTGAAcgaaaaatgtttttaaagaagtTTGAGCGTTATTCTCAATTGACATTTTTTCTATTAAGTTTCCACAAAATGTATCTTCCCTTTATCTAAAAATGGAGGAGCAGAATGTCTAGATTTCACTGACAGTAAAAGTTCTATCTGCTACCTGTACAGAcccaatttatttaaatactgaatgtattttatttatttattttgcagctgcTAAAATAAGGCAGTATGTCCCGTTTCTTGTCAGCCCATTTGGCATTGAACCATTTGATCCGAccactttgttttactgaatcTTCTCAATCCAACGTTTTCCATTTGGCTGCCCTAGCGTCATTcagaacaatttgcagaatTTGCTTTCTTGAGTATTTAAGTAAATTCACTCTCCTTATAATTATGGAAAGGTATGAATGatgatgcaaaacaaaatctattaatctgtttaaaaagcACCTGGGCAGCCAATTATAGTGGATTAAGAAGATCCAGTGGTATAAGATGGTGAATGTGAATGATTTATGGGAGATCATACTATTGGTACAATTTTTCTGTAGTGGTGATCATCATAACCTTGACACAACAGCTCTATACTGTACGTTAGTCTGTAAAATGATTGAAAACTACAACAATAAAAGCGACGTATGCTTTTCAAACCCAGCTAGCTGAATATAAGTCTATTGTTAGACATTGTTTCCTAAAAATGCAGACTGTCAGGAATAACTGCatgatgttgttgttgagtTGTGAAGCAAAGTGGGTCAGCGTACATCTAGcctcctttaaaatgtaaatactgtatCAATGATTGGTTGGTTTGTATTTCACTTTACAATTGGCTGTTAACCAGTCAGATCGTGGCAATCGACAGTTCATGTTTTGGGTCTTAATGTATTTCAGGGCTTTAATCTTTATTGCATTATTGGTCAGTTGTGTGTAATAAATGTTCAGTTACACTACAATATAATTACTGACATACTATATTTCTGTAATTATCTGTCATTTATTACagacctttttttaaatctaaactggtacattgttgttttttgtgtatggTAGAGTCATTGAATTGCTACTGTGTTATGCTCTACACATGAcagcaaattacatattttgattgatttgtgaaaaagtgtatttttgtgaataaggggttttctttctcaaaaactaagtaaaaaaacaaaacaagaaactgtgGCCTTAAATGTatactgtgtattttcttttcagtaacCATTAGGCAGTCATGGCTAATCCTGCTCATTACTGGACAGCATGTTGAGCTTAAATATTGCACCCTTCTTTTCAAAACTCATCGGCTTCACATCAGGTACCAGCATTTGAAAAGGCAGTATAAAACACGACAATGTACATAGTGTTGGATAGATAATGAGCCAATATGGGTACCTCTTCATACAGGTTTAGTTGAATTACTGTATCCGAAAAGACAAGTTTGTGGaatttaatgaatgattgttatttataaaaggagtttattacagttttctttGTGTTCTCAAAAACTCTTACTGGTTTATTTCAAGCCATTGTTTACTTTAGGTGTATGATTTGTTCAGTAAAATGATTGAATCCTTATTGGTATGGGATTTTAATATAAACCATGCATATAGCATGTTAAATGCTCCAGTAAGGATATGTTGCTTTTCTCATGCTTtggcaaaaatgtaaaaaaataaaataaaaaattacatgtatgtttctaattaaaaaaacatagaatTCTGTAAGATCTATCCAGTGGTTTGTTTTCCCTTAATTGACAGGGTGATGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175564 lncRNA downstream 552348 6482267 ~ 6510125 (-) True G139593
TU175433 lncRNA downstream 903710 6157743 ~ 6158763 (-) True G139496
TU175135 lncRNA downstream 1665914 5396339 ~ 5396559 (-) True G139249
TU174884 lncRNA downstream 2478301 4583865 ~ 4584172 (-) True G139039
TU174874 lncRNA downstream 2551166 4507504 ~ 4511307 (-) True G139029
TU175655 lncRNA upstream 152548 7218869 ~ 7219192 (-) True G139668
TU175760 lncRNA upstream 389223 7455544 ~ 7458491 (-) True G139752
TU175854 lncRNA upstream 879731 7946052 ~ 7946521 (-) True G139825
TU175906 lncRNA upstream 1044704 8111025 ~ 8115245 (-) True G139867
TU175922 lncRNA upstream 1114969 8181290 ~ 8181576 (-) True G139881
AMCG00002934 mRNA downstream 2585 7040280 ~ 7059888 (-) True AMCG00002934
AMCG00002933 mRNA downstream 305682 6743734 ~ 6756791 (-) True AMCG00002933
AMCG00002932 mRNA downstream 325199 6645632 ~ 6737274 (-) True AMCG00002932
AMCG00002927 mRNA downstream 633033 6422004 ~ 6429440 (-) True AMCG00002927
AMCG00002923 mRNA downstream 707607 6345840 ~ 6354866 (-) True AMCG00002923
AMCG00002936 mRNA upstream 11613 7077934 ~ 7081623 (-) True AMCG00002936
AMCG00002941 mRNA upstream 123016 7189337 ~ 7197989 (-) True AMCG00002941
AMCG00002945 mRNA upstream 282722 7349043 ~ 7350768 (-) False AMCG00002945
AMCG00002948 mRNA upstream 296731 7363052 ~ 7371613 (-) True AMCG00002948
AMCG00002947 mRNA upstream 336260 7402581 ~ 7407518 (-) True AMCG00002947
TU174755 other downstream 3059669 4001650 ~ 4002804 (-) True G138932
TU174734 other downstream 3112305 3937764 ~ 3950168 (-) False AMCG00002828
TU174506 other downstream 4343054 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 6137075 923010 ~ 925398 (-) False AMCG00002752
TU174135 other downstream 6138239 923010 ~ 924234 (-) True AMCG00002752
TU175710 other upstream 282490 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 864936 7931257 ~ 7938241 (-) False AMCG00002970
TU176000 other upstream 1419040 8485361 ~ 8494596 (-) True G139933
TU176103 other upstream 1780711 8847032 ~ 8847840 (-) True G140006
TU176114 other upstream 2170337 9236658 ~ 9237730 (-) True G140015

Expression Profile