RNA id: AMCG00003530


Basic Information

Item Value
RNA id AMCG00003530
length 975
RNA type mRNA
GC content 0.62
exon number 2
gene id AMCG00003530
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 7978775 ~ 7980197 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGCAGCAGACAGAAGCCAGCGAGACGGAGAGCAGCGTGTCCAGAGAGGCGACCGACACCGAGGAGAACGACTGCATGGCTTGCAGTCCCGTCCCGCTGAACCCGGACTGGTGCAAGACGGCGACGGGGCACATCAAGCGGCCGATGAACGCCTTCATGGTGTGGTCCAAGATCGAGAGGAGAAAGATCATGGAGCAGTCGCCGGACATGCACAACGCCGAGATCTCCAAAAGACTGGGCAAGCGCTGGAAAATGCTTAAGGACGGCGAAAAGATCCCCTTCATCAGGGAAGCCGAGAGACTCCGGCTCAAACACATGGCCGACTACCCCGACTACAAATACCGACCCAAGAAGAAACCAAAGCTCGACTCTGCCTCCAAGCCCAGCGCGCCGTCGCCGGAGAAGCACGGCGTGAAAGTGAGCAAGACCCCCGGGAAGAAGTGTCCCAAACTCAAGTCCGGCAAGACGGGGAGCAAGTCCTCCCCGGAGTACGGCGACGACTACGCGTTTCCCAGCCTGAAAGCGACTAAGCCCACCAGAAGCGTGCTCACCGACGAGGACGACGACGAGGACTACGAGGACGACCTGCAGATGCGGCTCAAGCAGGAGGACGAGGAGCAGCAGCTGAGGCCGTACGGGGTGGCCAAGGTGCCGGCCAGCCCGACCCTGAGCTCCTCGGCGGAGTCCGAAGGCGCCAGCATGTACGAGGAGGTCCGAActgcggcggcggcggcggcggcaccGAACAGCAGACtgttttacaatttcaaaaacatcACCAAGCAGAGCACCAGCTACCCGGCGTCCGTCTCGCCGGCCTCGTCCCGCTCGGTGTCCACGTCGTCCAGCTCCAGCGAGGACGCGGACGACTTGCTCTTTGACTTCAGCTTAAATTTCGCCCCCAACGCGGCCGGCTCGGACCTGGGCCACCCCAGTTCAGGAAACCTGTCCCTCTCCCTGgtcTACAATTAA

Function

GO: NA

KEGG:

id description
K09268 SOX11_12; transcription factor SOX11/12 (SOX group C)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1479 lncRNA upstream 181921 7796451 ~ 7796854 (+) True G1253
TU1466 lncRNA upstream 228310 7523861 ~ 7750465 (+) True G1241
TU1468 lncRNA upstream 450317 7526859 ~ 7528458 (+) True G1242
TU1445 lncRNA upstream 480431 7498067 ~ 7498344 (+) False AMCG00003524
TU1436 lncRNA upstream 488894 7489445 ~ 7489881 (+) True G1218
TU1499 lncRNA downstream 295565 8275762 ~ 8276983 (+) True G1271
TU1519 lncRNA downstream 360069 8340266 ~ 8340592 (+) True G1291
TU1531 lncRNA downstream 463543 8443740 ~ 8444024 (+) True G1303
TU1573 lncRNA downstream 680835 8661032 ~ 8666927 (+) True G1343
TU1577 lncRNA downstream 719269 8699466 ~ 8700554 (+) True G1347
AMCG00003526 mRNA upstream 431221 7532553 ~ 7547554 (+) True AMCG00003526
AMCG00003525 mRNA upstream 447650 7518051 ~ 7531125 (+) True AMCG00003525
AMCG00003521 mRNA upstream 464365 7505463 ~ 7514410 (+) True AMCG00003521
AMCG00003524 mRNA upstream 474760 7498040 ~ 7504015 (+) True AMCG00003524
AMCG00003527 mRNA upstream 496569 7466921 ~ 7482206 (+) True AMCG00003527
AMCG00003532 mRNA downstream 304630 8284827 ~ 8292218 (+) True AMCG00003532
AMCG00003533 mRNA downstream 336841 8317038 ~ 8337650 (+) True AMCG00003533
AMCG00003534 mRNA downstream 668960 8649157 ~ 8652470 (+) False AMCG00003534
AMCG00003535 mRNA downstream 839215 8819412 ~ 8842419 (+) True AMCG00003535
AMCG00003541 mRNA downstream 920259 8900456 ~ 8941678 (+) True AMCG00003541
TU1202 other upstream 1483870 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 668928 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 1275631 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 1797311 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 3509988 11490185 ~ 11491443 (+) False AMCG00003606
TU2385 other downstream 3593534 11573731 ~ 11577329 (+) True G1989

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00024947 True 1012 lncRNA 0.52 1 NC_007128.7 35880730 ~ 35881741 (-)
rainbow trout (Oncorhynchus mykiss) TU769790 True 2265 TUCP 0.44 1 NC_048572.1 13983844 ~ 13986108 (-)