RNA id: AMCG00003847


Basic Information

Item Value
RNA id AMCG00003847
length 3749
RNA type mRNA
GC content 0.41
exon number 20
gene id AMCG00003847
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 21491884 ~ 21535758 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttcagggtACTGCACTTTCTTTGAAGAGCTATGGATGAATCATCTTCAAATATAGGTGCTCAAGATTTTGATGTTTACAGTGCAATGGACTGGAAAGATGGAGTTGGGACTTTGCCAGGTAGCGAGCTGAAGTTTCGACAGAATGAATTTGGGGTTCTGGAGGTGATCACTGATGAGTCTGAGGTGGAAAGTGTCAAGAAAGCTCATGCTACAACCACGTGGACTGTCCCTACTGTACAAGAAGGCAAGActttttcagCAAGTCAGACAATTGTAAGAGACGAGAGGCTGTCCACCAGAGCACACACTGTGTGCTGCACACACTGCCATCAGAAAGGCTTACCTCATGATTTTCTACCTGAAGGAAATTTCTGCAGTGAAAAATGTTTACAGCAATCACAGGAAGTAGAACAGAGGCCAAAGAAAGATGTACCAAAACCTAATGGTGAGATCTTCAGCTCcaccagaaaaagaaaaatacagctaCCTGCAAATCTGAAAGAAGAGAGTATAGAAAATGGAGATCACCCcagggaggaggaagatgaatctGAAGAGAGACCTGACAGGAAGACAGCCAGAGCACCACAGAGAACTCGAAGGAAAAGACGGGGAGATGCTGCGCTGCTGAAACAGACTGTACCTTATGGAGGAAAGAAGAAGTCGTGGAGTTGGGCCTCCTAtctggaaaaggaaaaagctaTCGCTGCCCCCAGCAAGCTATTTAAGGAGcacCAGTCTTTTCCACATAACAAAAATGGATTCAAAGTGGGACTGAAACTGGAGGGAGTGGACCCTGAGCACCCTTCAATGTACTGCGTGCTAACTGTTGCTgaggttttaggGCATAGAATTAGACTTCATTTTGATAAATATTCAGACTGCTATGACTTCTGGGTAAATGCCAACTCTGCCGACATTCACCCTGTTGGATGGTGTGAAAAAACTGGTCACAAACTCCACCCCCCAAAAGGAATGAAGGAAGAGGACTTCAACTGGCAGTCGTACATTAAACTGTGCAAGGCCCAAGCAGCACCCAAAGCTCTgtttgaaaaccaaaacacaACAGTCACTCCATTAGGTTTTCGAATAGGAATGAAGCTGGAAGCTGTTGACAAGAAAAATCCCACTTTCATCTGTGTTGCTACAGTAACAGACATGGTGGACAGTCGATTCCTAGTGCACTTTGATAACTGGGATGAGAGCTACGACTACTGgTGTGATGCAACAAGTCCATATATTCACCCAGTTGGCTGGTGTAAGGACAATGGAAAGATCCTCACCACACCTCCAGACTACCCAAATGCTAAAACGTTCTCTTGGGAAAGATATTTGGACGAAACTAACTCATTACCAGCACCTGCAAGAGCATTTAAAGTGAAACCGCCCCATGGCTTTCCAAAATACGCAAAACTGGAAGCTGTTGACAAACGGAACCCTATGCTCATCAGAGTAGTTACCATTATAGATACAGATGATCACAGAATTCTGATTCACTTTGATGGCTGGAGTGACGAGTATGATTACTGGGTAGATACAGACAGCCCTGACATCCATCCTGCTGGCTGGTGTGCTAAGACCGGCCATCCCCTTCAACCCCCGATCAGTCCACAGGAAATGTTTGAATCCTCAGAGCAAGGTGGCTGTCCAACTCCAGGATGCAAAGGGGTGGGACACATAAAAGGGGCCAGATACTCTGGCCATCACAGtgccgTAGGATGCCCGTATTCTGACATCAACATCAACAGGGACTCTGTGCTTCCAGACCGGCTCAGTGGGGAGATGCCTACAGCAAGCCTAGCCATGCCAAAGAACAGGAAAGGAGAGCCAAGCATTGAACCAACATGCCCTACAGTCGCaaacATAAGCTCAAACCAAAATAATCACAGCAAGACAAGTGGACTGCAAAAGTTAGGTGCAGAGGAAACAAATGGAGAACCCCCACCTAAAAAGCCAACTTTGTGTGACAACAAAGGAAAGAAGCATAACAGAGTGGGACGTCCATGTAAACAAAGAAAGATTGAAGAGGAATTGGAGGAGGCGGAGACAGAAAGCGAGGTGTCCTCGATAACTGAAACCAAAGAAAGTGAAGAGATGACCTTGCAACAGGCCCTGCACCAATCTGTGTTTATGCCCTCCACTTCACCCTTACCCAGCCTGCCCCTGTGCTGGGAGCAACACAGCAAACTACTGCCCACTGTAGCTGGAATAACTGCCAGTAAAGTGGCTGAGTGGACAGTAGAAGAGCAAATTGACGGTGAGGCGTTTCTGCTGCTCACACAGGTGGACCTTGTGAAGATAATGAGCATTAAACTTGGACCTGCCTTGAAAATCTACAACTCCATCTTGATGTTTAAAACTGCAGAGAATTCATACAATGAGCTTTAATCATGAGACGAAGGCAAACTTTTTTGCACTGGTGAGCCTCCTTTGAGGCTTTTGATTGAGTTGAAGCACAAAGAACTCTTTtctgattaatattaatttcatgcAGACCGAATGCACATGAACTCAAGGGAATTGCACAAGAAGCTTTTATATAAGGCAAGCCTTCAAGCTCAACTGTCAGCCATATTTCACATACTGAGGATCACCCATCTAGAGTTTTCTTACCTtgcaaatgtataataatttcaacttgtttataattcaattaaaacacagaggAGCTATTCTTCAGTGGAAGGgtcaatgtgtgttttgtttacaaaataaatatatatgtacgaATATCGTACTTATCTCATCAAGTAATATTTTCCGAAATCTAGACTCagtaatttgcatttcaaagttattgaccaacttattttaatatttgaaatgactGAAACCATTGTTACACATTAGATTAGATACACATTGCAGTACATTTACTTAAACTGTGAAATtcatcaatgtttatttttaaactgtgctTTTCATGTTTAACTTAATGCATTTAAGAAATAGTGGTTGTTGCAAAATGGGGCTTCAAAATATTCTGAAGAAATTCATACAAAGAAGTACAGCATTTTCCCAGCTGGAAGGCAGAAaaagatgaatacatttaaagaaattataTAGTACATTGTAATCATAACCACctcaatttttacattttaataaggaGATGCCTGATGAGAGAGCTTTTCAGGAATTTAAAAGCTAATgtacaatttccattttaaaagccaTGCTGATCATATTTTGTGAATTTCACAGTATGTATTACAATGGCGCACATTTTAGATTTGGGTTAAGATATTAAAAGTGAAATGTCAGCAGGTGACTAGGACTAGGATCAAGTTAGAAACAAGCTAGTTGATATTAAACTGAGGATACCACCTAATGTGAGTGCTGTTAAGCATACTGTTTTCATGTGTTCATAGATTCTCAGAAACAGAAACCTGTAGTTTTTACAGTCCCATGAACTATGATATAGTACTGGTATACAATAATATGAATTGGTCAAGTTGGTCCTACTCCATATTGATAGCAGGCAATATGCAATTATAAAAAAGTGGTTTATAGTGAAGCCTACAGtgcacagaaaatacaattttcagaattatattttgtactctgttgactttatttatttatttaatggtatGACGGTCATGCTGCAAAGGTAAGGGGCTCAGCAAAATGCAGAATCCTGGGTAATATATATGTGGAAGAGCCCATTACCTTTCCTGTATATCATAAACCATCTAACTGAAGTGTGCCATTTAttgacaatgaaataaaaatgttactgtGGGTTA

Function

GO: NA

KEGG:

id description
K24387 L3MBTL; lethal(3)malignant brain tumor-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4463 lncRNA upstream 401630 21089595 ~ 21090254 (+) True G3690
TU4443 lncRNA upstream 564082 20925812 ~ 20927802 (+) True G3670
TU4439 lncRNA upstream 578896 20912142 ~ 20912988 (+) True G3666
TU4432 lncRNA upstream 583367 20903572 ~ 20908517 (+) True G3661
TU4413 lncRNA upstream 631590 20835737 ~ 20860294 (+) True G3648
TU4545 lncRNA downstream 60098 21595856 ~ 21598430 (+) True G3754
TU4549 lncRNA downstream 64874 21600632 ~ 21600860 (+) True G3757
TU4559 lncRNA downstream 196733 21732491 ~ 21732699 (+) True G3767
TU4562 lncRNA downstream 214769 21750527 ~ 21759799 (+) True G3770
TU4577 lncRNA downstream 354765 21890523 ~ 21901648 (+) False AMCG00003853
AMCG00003846 mRNA upstream 44763 21440114 ~ 21447121 (+) True AMCG00003846
AMCG00003845 mRNA upstream 53205 21348227 ~ 21438679 (+) True AMCG00003845
AMCG00003843 mRNA upstream 158660 21314074 ~ 21333224 (+) True AMCG00003843
AMCG00003844 mRNA upstream 195666 21288460 ~ 21296218 (+) True AMCG00003844
AMCG00003836 mRNA upstream 1158348 20333123 ~ 20333536 (+) True AMCG00003836
AMCG00003854 mRNA downstream 321732 21857490 ~ 21862799 (+) True AMCG00003854
AMCG00003853 mRNA downstream 354801 21890559 ~ 21901865 (+) True AMCG00003853
AMCG00003855 mRNA downstream 414573 21950331 ~ 21958985 (+) True AMCG00003855
AMCG00003856 mRNA downstream 434738 21970496 ~ 21981590 (+) True AMCG00003856
AMCG00003861 mRNA downstream 565530 22101288 ~ 22106730 (+) True AMCG00003861
TU4227 other upstream 2122618 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 3339570 18146660 ~ 18152314 (+) True G3108
TU3792 other upstream 3349251 18137755 ~ 18142633 (+) True AMCG00003779
TU3719 other upstream 3807896 17681817 ~ 17683988 (+) True G3047
TU3283 other upstream 5452244 16035663 ~ 16039640 (+) False AMCG00003712
TU4541 other downstream 13443 21549201 ~ 21549533 (+) True G3751
TU4563 other downstream 210092 21745850 ~ 21760630 (+) True G3771
TU4606 other downstream 386878 21922636 ~ 21923787 (+) True G3799
TU5028 other downstream 2174480 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 3147642 24683400 ~ 24683920 (+) True G4360

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000027_06359006_06369325.mRNA True 3818 mRNA 0.46 19 CI01000027 6357552 ~ 6369325 (-)