RNA id: AMCG00004304


Basic Information

Item Value
RNA id AMCG00004304
length 1628
RNA type mRNA
GC content 0.44
exon number 3
gene id AMCG00004304
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42210430 ~ 42216362 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGACTCGCCCCGGACCCGGACCCCCGACACGGACCCCGGACCCGGACCCGGACCCCCGACACGGACAACTCCACCTCCACAGGGCAGCGGTTGAGTTACTTTGAATCGTGTTGTTTGCCCTTTCAGGTATGTCTCACAGAGGCGTCGGCACTCTGGTCAGCCACAGCAGTGCCACCTACACCCCCCCTGCCCTGATGCCCGGGTACTGTGGCCATGTACCCACCGTTAAGTTTTCCTTTGGCGACACGTTTGGGAATGCTACCATGAGACACTTCCAGGATTTCCGTAGTGCTGTCCTGGAGTCCAGCAAGAGCCCTTACAGCTCCGGAGGCCAGTTCCCCACAGTCTACTCCCACAATCCCTCACTAGTGACAGCCTGCAGGTCTCGCAGTCGAGACAGAGCCCTGCTCACCCCGTACTGGTCCAGGCACAATGTGGATCTCAGCCGCCAGGAGGAACTCAAAAAGTTTGAAAAGCTTGCCCAGAATCACAGGGATGCTTACAAGGACACGACAGGAACCCTGCAGCCAGTGAAATACTTCATTCAACCAGTTAAGGAAAGCGAAAGATTCCCACAGAAGATTATGTAAGAATGCCAGTCTTCATTAAAAgtcagcacaaacaaacaagaaagaaaattacaaagaCCAAAAACATGCAGCTAAATTGTGTCTTCCTCAAAATGTGTCCATCAGTGGCTGTTGAGTTGCAACAAAGTCTAATATGAAGCTTGATTAGTTACATTTAAATGGttaatcattatatattatttaagtcAAAATGCTATTGTGGAGttgtggtcagggctctggagttctgagcagagggttgtgggttcaatcccaggtgactgactctgctgttgtacccttgagcaaggcactgtacctagatcgctccagtacaaacccagctgtataaaagggtaattgtatgtaaaaaataatttgatctaTTTTAACAATTGCTCAACAACAAAGTCACTCTAGATAAgggctaagaaatataataataaaatgtatttaaatatatattgtgcctGTGGCTCTTGTTGGATGACATGCCACAAGGATCACAGCTTTTTTCACAGTATTACTTACTGACTTTGggaaaagctttttatttttttattttttgtgtttaataaatgttcccttttTCGCTTTCTTGTGATAATGGCGTTTGGTCTTCAGGTTTGTAAATTAGCCTGTAGGCCCGTGGTCAATTACAAATTAGTTGTGTTGACACTGACATGAATGCAATCACACTCATGAACAAAGATGAGTACAAGTGCAagacaagattattatttttactgtaaaattACCCTCCAGTCAAAAACGACTTCTTCTGAATATTTGTGCTATAAATGGGTTCTTGGTGTGACATTCGCTTCCTTTCATGTCAACAGAAGTAGCCGTTTGCTCCAACAAAGTGTTTTCTTCCTGCTTTGCCCTTCTGCATTGTAGTGGCCTGCTCACATTCCTCAAAAAGCTTTCCTGTCTTTTAATTTGCTAGTGGCGAACATGTCAGTGTAAGAAGAAggaccattttaaaatgtagtccttggctcaatatatatatatatatatttatagatctCAAAATGCAGCCAGTTTCATACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8872 lncRNA upstream 120777 42087791 ~ 42089653 (+) True G7231
TU8861 lncRNA upstream 142705 42065497 ~ 42067725 (+) True G7221
TU8805 lncRNA upstream 244197 41966014 ~ 41966233 (+) True G7182
TU8686 lncRNA upstream 603671 41605110 ~ 41606759 (+) True G7101
TU8687 lncRNA upstream 681122 41523053 ~ 41529308 (+) True G7102
TU8918 lncRNA downstream 118676 42333425 ~ 42336643 (+) True G7272
TU8928 lncRNA downstream 150119 42364868 ~ 42365654 (+) True G7278
TU8939 lncRNA downstream 161876 42376625 ~ 42379961 (+) True G7288
TU8944 lncRNA downstream 260827 42475576 ~ 42475886 (+) True G7293
TU9117 lncRNA downstream 1021069 43235818 ~ 43237653 (+) True G7418
AMCG00004303 mRNA upstream 112108 42089871 ~ 42098322 (+) True AMCG00004303
AMCG00004300 mRNA upstream 126588 42069528 ~ 42083842 (+) True AMCG00004300
AMCG00004301 mRNA upstream 145019 42047643 ~ 42065411 (+) True AMCG00004301
AMCG00004298 mRNA upstream 165339 42029377 ~ 42045091 (+) True AMCG00004298
AMCG00004299 mRNA upstream 185690 42010685 ~ 42024740 (+) True AMCG00004299
AMCG00004305 mRNA downstream 5271 42220020 ~ 42259741 (+) True AMCG00004305
AMCG00004309 mRNA downstream 123765 42338514 ~ 42347082 (+) True AMCG00004309
AMCG00004308 mRNA downstream 135482 42350231 ~ 42355400 (+) True AMCG00004308
AMCG00004314 mRNA downstream 333591 42548340 ~ 42576558 (+) True AMCG00004314
AMCG00004315 mRNA downstream 377117 42591866 ~ 42634968 (+) True AMCG00004315
TU8679 other upstream 703199 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 5210272 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 5318684 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 5435907 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 5935500 36272192 ~ 36274930 (+) False AMCG00004167
TU9000 other downstream 474030 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 3747261 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 5932139 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 6717701 48932450 ~ 48934095 (+) True G8099
TU10340 other downstream 7936515 50151264 ~ 50157719 (+) True G8377

Expression Profile