RNA id: AMCG00004389


Basic Information

Item Value
RNA id AMCG00004389
length 5400
RNA type mRNA
GC content 0.53
exon number 35
gene id AMCG00004389
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 46300852 ~ 46319307 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGAAACTAGATGCTTAATTTGAGCCGGAATGGACGCAGTGTCCTAAATACGTTTAACTagttattaatttcaaatactaAATAGTTAAACATGCATTATTACAACATCATTTTGCTAGCCTTTGAGCAGtataacaataatgtattattatttattttaactaagtAAACCGAATACATAGATCTGCGCATGCGTATGTCTTTTATTTTCGCGCCTGGATTCAATATTTGGAAATAGGAAAGATGGAGCTGTTGGAAACTTTACAGTTGCTGAAAATCAGTGATATTTCCCACGGATGGGTGGACACAGTGTGGGAGCTGGACTTTACCGAGACCGACCCACTGGACGCTCGCATCGAGGGAGAAGTTAACGAAAATGGACTGGAGGCCTTCAAAGCAGTTTACCAACACCTGCTCCCCTATGCCACAGAGGACAGAGCAGTTACTGAAAGTGTCTGGACGCTGTTCTCCCAGCATGGACTGTCGGGCAGTGGGCTGGTGGTGCTTCTCCACCACTTTGTCCAGACGGGTCACAGTAAGACAGCCAGCGTGCCCCAGAGACAGTGTGCCTTGAGAGCAGCTGCCATTTACTTCCTGCTGCTGGAGATCCCAGGCAAGATTGTTTCCGCTCCTGTTGTAATTGTGCCGATTCAATCACCTGTTGTCTTTAATgatctttcatttttttgcaaTAACAAAGGGAGCATAACCAGCAAGGTCTTCCACCCTGTGCTGTTTGACAAGTGCCTGGACACTGTGAGAAAGACCTGGCCACAAGACCTGGACTCAGGGAAGAAACGCAAAAAGGAAACCGCCAAGAGTTCACAGGGTGACCCAAAGGGCCGGAAAAGAGCCAAACCTCCGCGAAGGGAAGACCGAGAGCTGGAGGATGAGTTTGAGGACGGTGATCAGGATGAGGAGGAGGTCTACATCTCTGGGCAGGATCTCCTGCAGCTTCGGGAGGGCATCTTCTTCTTGGTCAAGAACTTCCTTAGGCTGCTTACCAAGTTCCCTCTGAAGGACAAGCCCCAGAACGTGCAGCACTGTGTGCAGGTGCTGTCCTCGGCGTCTCGGATTTTTATAGCACTTACCAATTTCGAGCCAGTGATTGGAGAACTAAGGTTTTCAGAAACGCAGGATATTAACAGAATGAAGAGTCTCCCTGACGTGGCCTACTGGGGGCTCAGGCTGCTCTGCTCTCCAGCTCATGGGGAAGGAAATCAGACGGTGCGCCGGGTCTTCCACAGGCTCCTGTACGTAATTCTGATGATGAGCGGTGGTGACGGATCGCGACCCTGCCTCCTCGCTCTGACCCAGCAGGTGGTCGCTGCCAAGGACATGGCCATTCGCTTTGTGAGTCACATTGTCGATGAGCTGAAGGACGATGTGCTGCCTATTCTCCGAACTCTGCTGCAGCACATCTGCGCCAAGGTGGCAGATAAGACAGAGTACCGCACCCACGGAGCTCAAGCGCTGGTCAGACTGCTGGCTAAACTGTCCTGTGCCGAATATGCTTCCTTCATCCAGTGGCTCTATGAATACTCCTGTAACGCCAAGACACAATACCGACAGTTTGGCCTGGACGTGGCCATGGCCCTGCTGGAGCAGCCGGAACGCACCCCTGAAGCCCCTCTGCCCCCAGAGCAGGCCCGCCTCCTGCAGCACAAGTTCCTGGTTCAGGCGATGATCTTCAGCCGCTGCTCCGACCGGACCGCCACCGTGCGCAGTCGAGCCTTGGCCTGCCTGGCGCAGTGTCTGGAGCAGCAGTCTCCCAGCACGGCGGAGGGCATCCAGGAGCTCATGCACGGGACGGTTGCCCGGACGATGCTGGATATGGATCACATGAGCGTTGCAGGGAATTCCGAAGGTACCCGTAATATCTCTGAGGCAAATCCCCACGTTACAGCAGGTGTCTTCAAAACCATTGAAATCACCAGTGGGGAAGATGGATCCATTTTCGATGCAAGGGACACCATCGCCATGCTCCGACAGCGGGCGAGCGATGAGAAGACCAACGTGAGGAAATCATCCTTGCAGGTGTTAATGAGTCTCCTGAAGATTGGCATGATCCCCTGCACCCCAGAGGACCTGTCCACCTTACAGGACCGCTGCCGAGACCCAGCCTTGTCTGTGAGGAAGCAGGCCCTGCAGTGCCTCACTGAACTCCTTGCTGCTCAGCCAGAGAACAGCGTGGTGCAGAAGGCGTGGCTGACGGGGGTGGTGCCTGTTGTTATGGACTCCGAAAGCTCTGTTCAAGAGAAGGCCTTGGATTGCCTCGAGCAGACTATCCTTCGCCACATCCAGAGCTACAGCCGGTTCAGCGATAAGGACAGCCGGCAGAGACTGGCCTGGGACCTGCTGACCCTCCTGAGTGGGGAGAGTCAAGACCTGTGTCGTTACCTGAGCAAAGCCTTCATCATCTGGGCCAAGCAAGACAAGTTCTCCACGGTCTTCGTCAATAACCTGATCTCTCACACGGAGACCGAGCATGCGTCCGCCGCCTGGCTGCTGCTCTCCAAGGTGGCCGGCTCCGCCCCCAGGCTCAACTACGGCAAGATACTGGAGGCCTGGGATCACATTGTCAGCAATGAGGATATCACCGTCTCAACCACGTGCCACGTACTGTGTGTTATCGGACACATCGCCAAGCATCTCAACGGGGACACCAGGGAGAGGGTGATCGAGGACATTATGAAGTGGCTGAAGGGGTTCCACGCCCCCATCATCGTCATTGGCTCCTGTGTCAGTGCCCTGCAGAGGCTGGTTCAGAGGGACTCCGTGGAGGACACGCAGAGACTTCTGAACCGGTACTGTGGGGACCTGGTTTCTCTCTGTGACTCCTATCTTTCGAACCTCATGCTGAGCGCGGACAGATCGCAGAATATCGATGAGGAGCTTGTGGTGAAGTACTTGTTCACTCTGGGGGAAGCGGCTTTGCAATGTCCTGCCAAAGTGGAGAAAAGAGTCTTCCTTCTCGTCCAGTCAATACTGGCTGCGAATGTCAGCTTGGACCCAGTCGAGGGGACGGAGGAGCTGCCCGCCTCACAGCCCCTGTCCCAGTTCAAGCCTTCCACCATGCCCACGGCAGTCAAAGCCCATGCCTTCATCACCCTGGGCAAGCTGTGTCTGCAGAATGAGGACCTGGCCAAGAAGTGTGTGCCCGCATTGGCCCGCGAGCTGGAGGTGAGCACGGAGGTGCCCGTGCGCAACAACGTGATCATTGTGATGTGCGACCTGTGTGTGCGCTACACCACCATGGTGGACCGGTACATCCCCAACATTGCCGCCTGCCTGAAGGACCCCGAGCCCCTCATCCGCAAACAGACCCTGATCATGCTGACCAACCTGCTGCAGGAGGAGTTTGTGAAGTGGAAGGGGTCCCTGTTCTTCCGGTTTGTTGTTGTACTTGTTGACCCTGATCCCAGCATTGCCAGGCTTTGTGAATTCTGTTTGGTCCACCTGCTGCTGAAGAGAAACCCTGTCATGTTTTCCCAGCATTTCATAGAGTGCATTTTCCACTTCAATGGCTATGAAAAGCATGAGAAGTACAACAAGTTCCCACAGACAGCCCGTGAGAAGGCCATGTTTTCTCTAAAAGGGCCCAAGAACAAAGAGCTACGAATGAAGATTTATAAATTCCTCCTGGAGCATTTCACAGACGAGCAGCGCTTCAACATCACCACGAAGATCAGTCAGAACGTGCTGGCGAGCTTCGTGGATGGGCTGCTGCCCCTGCACTTGGAGGCCAGTGAGCTGCTGTCGGACACCTTCGTGGTGCTGAGCCTGAAGGAGATGAAGCTCTCCGCCATGAGGAGCCGGCCGGAGGAGGAGCTGCAGCCCGATGATGATGAGATGGCCGTGGCCAATGCCGTCATGCAGGTGGCGCAGAAGAAGCTCATCTCACAGGTCCAAAAGAAGAATTTTATTGAGAATGTGATTCCCATCATCACATCCCTCAAGGCCATGCTGGAGGAGATGCGCATCCCTGCCCTGAAGGACCTCATGGCGTACCTGCGGGAAATGATGCAGGACTACCGGAATGAGGTGAAGGACTTTTTCTCAGTGGACAAGCAGCTGGCAGCGGAGCTGGAGTATGACATGAAGAAGTACGAGGAGCAGCTGCACAGGGAGGGGGAACAGGGCAACGGCAGCACTGTCACAGCGCCCGACGCCAACACTCGGCCAGGAACACCCAGGCCCTCAGTCTGCCTGTCTCCTGTCCCATCCTCGAGCGCTCGAGGCCAGGGCCCCCAGGGCGGGGCGTCTCCATGCATGGCTGGAGCTGCAGGCACCACTCCCCAGCCAATGTGGCCCTCGACGCCAGTCTTCCTCACGCCCAAGCCTGCCGGAACGACAGCGACCAGGGCTCGGGTCCTGTCTCTGAGCACTGCTGCTCTCCTCAACTCTGCCAAGAAAGTCGCAGAGAGCCTGAAGAACCAGCGCAGGAACAGTGTGAGCAGCACATCGCCCGCCCCCAGCAGCCAGCACACCCCGCTCAACACCTCAGctAGGGTCGCAAGACAGAATCGCactcccagcagcagcagcagcagcttggTAGACCGAGCGATCAGCACTCCAGACCAGACCATTGAAAATGTGACGTTTGGAGCCGGAGTCAGTTACATCTCCAGATCCCTGTTAAACTCCAGTGACAATGaGCCCAGAGATTCTGAGAAGAAAGATGCCAACGTCCTGTACTTGATGTCCCCGGACCGGCAGACCCCGCAGCCCCGGCAGTGGAACGTGGAGTCGCCCATCACCCGCACCAAGGTCAGACGCTCACAGAGGACCCCCCTGAAACCGCAGAATTAGGACCTGCTGATCTCCGGTTCAACTGGCTTCTTCCATTTACATGCTGCTTTCCGTTGTGGTcacaggttgttgtttttattttttttaatatatatatgtaacactTCCTCACACGATGCCTGATGTGGACTTGCTTGTATCTGTGAAAAGATCACATAAGGTCTATCTAAATAgtgtgaatatattaaaatatgctgACTATGGCACTTCAAACCTTTGTGTAAATCCCTTTTTGTAAGACATTGAACTTGCATAGAAGCACATTAACTGGATCTGGATTAATCGAAAGAAAGGATGTTATGcccattaaatatttacttaagGTGACCCTAAACTTGAATTCCTTAAAAGTCCTATTACAATGTAGTTATGATGGTGTTTATCCCCCATAATTCATTGTGTTTAAGATTATGGTTATTTTTCCATAATGCTGCTTATTTTAAGCTAGATGTGAAAGGATTGCAATAGTTTCTATATGGCTTTCGGTAATTGCTTCTCAGTGATGTCATTTCCTGCCTATTCTTTTTGTGCATTGTTTAACttccaaatataaacaaataaatatacaaacaaaatggtttAGAA

Function

GO: NA

KEGG:

id description
K11491 NCAPD3; condensin-2 complex subunit D3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9558 lncRNA upstream 379047 45919390 ~ 45921805 (+) True G7765
TU9437 lncRNA upstream 1660120 44636305 ~ 44640732 (+) False AMCG00004355
TU9429 lncRNA upstream 1683453 44616316 ~ 44617399 (+) True G7662
TU9408 lncRNA upstream 1712868 44587706 ~ 44587984 (+) True G7644
TU9402 lncRNA upstream 1725855 44574331 ~ 44574997 (+) True G7638
TU9695 lncRNA downstream 71081 46390388 ~ 46390751 (+) True G7879
TU9725 lncRNA downstream 396471 46715778 ~ 46717255 (+) True G7906
TU9730 lncRNA downstream 402522 46721829 ~ 46723088 (+) True G7911
TU9785 lncRNA downstream 672910 46992217 ~ 46997805 (+) True G7949
TU9814 lncRNA downstream 1328881 47648188 ~ 47648574 (+) True G7974
AMCG00004390 mRNA upstream 11607 46285450 ~ 46289245 (+) True AMCG00004390
AMCG00004388 mRNA upstream 46461 46236357 ~ 46254391 (+) True AMCG00004388
AMCG00004387 mRNA upstream 113445 46180538 ~ 46187407 (+) True AMCG00004387
AMCG00004384 mRNA upstream 301744 45981625 ~ 45999108 (+) True AMCG00004384
AMCG00004380 mRNA upstream 333295 45962877 ~ 45967557 (+) False AMCG00004380
AMCG00004397 mRNA downstream 308511 46627818 ~ 46657794 (+) True AMCG00004397
AMCG00004396 mRNA downstream 350667 46669974 ~ 46681968 (+) True AMCG00004396
AMCG00004395 mRNA downstream 369293 46688600 ~ 46702427 (+) True AMCG00004395
AMCG00004401 mRNA downstream 474080 46793387 ~ 46797648 (+) True AMCG00004401
AMCG00004400 mRNA downstream 550018 46869325 ~ 46882912 (+) True AMCG00004400
TU9559 other upstream 332546 45962010 ~ 45968306 (+) True AMCG00004380
TU9000 other upstream 3609743 42688779 ~ 42691109 (+) True G7329
TU8899 other upstream 4084490 42212510 ~ 42216362 (+) False AMCG00004304
TU8679 other upstream 4793621 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 9300694 36999357 ~ 37000158 (+) True G6369
TU9841 other downstream 1827581 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 2613143 48932450 ~ 48934095 (+) True G8099
TU10340 other downstream 3831957 50151264 ~ 50157719 (+) True G8377
TU10527 other downstream 4424484 50743791 ~ 50753349 (+) False AMCG00004477
TU10626 other downstream 4795634 51114941 ~ 51115262 (+) True G8606

Expression Profile