RNA id: AMCG00004397


Basic Information

Item Value
RNA id AMCG00004397
length 1065
RNA type mRNA
GC content 0.57
exon number 8
gene id AMCG00004397
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 46627818 ~ 46657794 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cCCCCTACGTTCACGGAGACACCACCGCAGTATGTAGAAGCGAAGGAAGAGGGCAGCATCACGCTGAGCTGCACTGCCTTTGGCAATCCTAAACCCGTCGTCAGCTGGCTGAGGGAGGGTCAGCTCCTGGGGGACAGTGGCAAATACAAGGTTAGCGATGGGAGTCTGACGGTCCTGTCAATCAACCGGGAGGATCGGGGGGCCTACACATGCCGGGCCTACAGCATTCAAGGAGAGGCCGTCCACACAACCCGCTTGCTGGTCCAAGGGCCTCCATTTATTGTGTCACCGCCTGAAAACATCACTGTAAACATATCCCAGGATGCATTGTTCACCTGTCAAGCAGAAGCCTATCCCGGCAACCTGACCTACACCTGGTTTTGGGAGGAAGATAACGTCTTCTTCAAGAATGACCTGAAGCTGAGAGTTCGTATTCTCATTGATGGAACCCTCATCATCTTCCGAGTGAAGCCGGAGGATTCTGGGAAGTATACCTGCATTCCCAGCAACAGCCTGGGCCGCTCTCCCTCTGCTTCTGCCCATCTGACAGTACAGTCTGTGCTGCCTCTTTCAGACCCTGCCCGGGTTGTCAACATGCCACCCGTCATGTATGTCCCGATCGGACTGCCAGGATTCATCCGCTGCCCAGCTGACGCCAACCCGCCATACCCCGGCTGGAGCCAGATGGAGGACGGGACCATACGTGTGGAGGAGGTGACAGAAGATTCTCTTGGCACTTATACCTGTGTGCCTTACAACATCCTGGGCACCATGGGACAGTCCCCCCCAGCCCGCCTGGTGCTAAAGGATCCCCCTTACTTCACGGTGCTACCTGGCTGGGAATACCGGCAGGAGGCTGGGAGAGAACTGGTGATCCCTTGTGCAGCTGCCGGAGACCCATTCCCGACCATCACATGGAGGAAGGTAGGGAAGCCCAGCAGAAGCAAGCACAATGTCCTACCCAGTGGCAGCTTACAGTTCAAATCCCTCAGCAAGGAGGACCACGGGGAGTGGGAGTGTGTCGCCACCAACGTTGTCACAATCATCACTGCCAGCACTCATCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9695 lncRNA upstream 237067 46390388 ~ 46390751 (+) True G7879
TU9558 lncRNA upstream 706013 45919390 ~ 45921805 (+) True G7765
TU9437 lncRNA upstream 1987086 44636305 ~ 44640732 (+) False AMCG00004355
TU9429 lncRNA upstream 2010419 44616316 ~ 44617399 (+) True G7662
TU9408 lncRNA upstream 2039834 44587706 ~ 44587984 (+) True G7644
TU9725 lncRNA downstream 57984 46715778 ~ 46717255 (+) True G7906
TU9730 lncRNA downstream 64035 46721829 ~ 46723088 (+) True G7911
TU9785 lncRNA downstream 334423 46992217 ~ 46997805 (+) True G7949
TU9814 lncRNA downstream 990394 47648188 ~ 47648574 (+) True G7974
TU9817 lncRNA downstream 1027726 47685520 ~ 47685881 (+) True G7977
AMCG00004389 mRNA upstream 308511 46300852 ~ 46319307 (+) True AMCG00004389
AMCG00004390 mRNA upstream 338573 46285450 ~ 46289245 (+) True AMCG00004390
AMCG00004388 mRNA upstream 373427 46236357 ~ 46254391 (+) True AMCG00004388
AMCG00004387 mRNA upstream 440411 46180538 ~ 46187407 (+) True AMCG00004387
AMCG00004384 mRNA upstream 628710 45981625 ~ 45999108 (+) True AMCG00004384
AMCG00004396 mRNA downstream 12180 46669974 ~ 46681968 (+) True AMCG00004396
AMCG00004395 mRNA downstream 30806 46688600 ~ 46702427 (+) True AMCG00004395
AMCG00004401 mRNA downstream 135593 46793387 ~ 46797648 (+) True AMCG00004401
AMCG00004400 mRNA downstream 211531 46869325 ~ 46882912 (+) True AMCG00004400
AMCG00004399 mRNA downstream 226068 46883862 ~ 46892939 (+) True AMCG00004399
TU9559 other upstream 659512 45962010 ~ 45968306 (+) True AMCG00004380
TU9000 other upstream 3936709 42688779 ~ 42691109 (+) True G7329
TU8899 other upstream 4411456 42212510 ~ 42216362 (+) False AMCG00004304
TU8679 other upstream 5120587 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 9627660 36999357 ~ 37000158 (+) True G6369
TU9841 other downstream 1489094 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 2274656 48932450 ~ 48934095 (+) True G8099
TU10340 other downstream 3493470 50151264 ~ 50157719 (+) True G8377
TU10527 other downstream 4085997 50743791 ~ 50753349 (+) False AMCG00004477
TU10626 other downstream 4457147 51114941 ~ 51115262 (+) True G8606

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000006_04786488_04866122.mRNA True 4918 mRNA 0.54 22 CI01000006 4786425 ~ 4866504 (+)