RNA id: AMCG00004585


Basic Information

Item Value
RNA id AMCG00004585
length 3444
RNA type mRNA
GC content 0.68
exon number 21
gene id AMCG00004585
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 54314122 ~ 54327599 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGTTCAGGAGCGTGTGTGGGATGGATGCACTCGACCACATGCTCACTGACCCCCTGGACTCTGGGCAGGGCAGCGACGGACGCATCATGGAGGAGTGCATGCTGGGTAACTCCCGGGTCAGCCTGCCCGAGGACCTGCTGGAGGATAGCACGTGGCGCGGGGTTCTGTCGGAGGCCCAGCGGCAGCGGCTGTGCCAGCTCCTGCCGCAGTTCCCCGAGGACAACGCCGCCCTGCAGGAGGGGGTCATCGCCGACCTCTTCGGCAACCAGAACTTCCGCTTCGGGAACCCCTTGCACCTCGCCCAGAAGCTCTTCAGAGATGGCCATTTTAACCCGGAGGTGGTGAAGTACAGGCAGCTGGTGGCCAAGTCCCAGAAGAAGCGCTTCCTGTACTCCCAGCAGCAGTACTGCCACCGGCTGCTCAAACAGATCCTCGTCTCCAGGAAGGAGCTGCTCGACCAGGCGTGCCGCGGTGGTCCGGACCTGGCGGTGCGGCGGCGATACCCGTCCCCCCCGGCACGGGGGGAGGACAGAGAGCAGCGTGCGCTCCGCCGGGTGGGCCGGATCCTGCAGGAGGTGAAGAGTGAGTGCGGCGACGGCACTGTGTCCTCCGATGACGACGatgTGGGCTCTTGGCTACCACCCCCACcgtctccctcctcctcctctagcCCCTCTGTGTTTCTCAGGGACCGGCCTGATCtggtgacctctgacctcagcCTGAATGACATCATGTCCCGGGCGAACGCAGGGCGCAAGGGCTCCTTCGTAGcgCTGTTCGACCTGGCCGTGCCCAAGAAGAAACCCAGGgaggacaagaagaagaagaagatgcgGCCGGTGAAGTTGGAACCGGAGGAGCCGCTGGACATCCTGGCCCCCCCCGAGGCCCCCCCAGCCCTGGCTGCCCCCGGCGCTGCTGTCCCCGCCCCCCCGGAGCCACCGGCCACGCCCCTGCCCAGCGTCAAAGAGGAGCCACTGGAGGAGGCGCACACCTCCCCCGCCCAGCTGGAGGAGATCACGGCCAGCTTCTTCAACCTGCTGGAGGACATCCTGAGACTGGAGGGACAGCCCAGCCTGTCCACGctggagGACAAGGTGCAGCAGTGGCAGGCCTCCCCCGCCAGCACCCTCAATCCCTGGTTCTCCGCCGCCCCCTGCTGGTCTGAGCTGGTCCTGCCCGCCCTGCAGTTCCTGTCCGGAGAGAGCAAAGgggTGCTGTCTCTGCCCAGCGGCGTCCCCCCCATGGTGGAGTTCCGGGAGCGCTCTCAGCAGTGGAAATGGATCAAGAGTGAGGAGCTGGCAGAGCTgacaccccccaccccgagAGTGTGGACGGACTATGTGGTGCGGCCCAGCACGGGGGAGGAGAGACAGGTCTTCCAGGAGCAGGAGCGGCAGCGCTACGACCAGCCGCACAAGGCCTTCACGTTCCGCATGCACGGCTTCGAGTCGGTGGTGGGCCCGGTGAAGGGCGTGTTCGACAAGGAGACATCGCTCAACAAGGCCCGGGAGCATTCGCTGCTGCGCTCCGACCGGCCCGCCTATGTCACCATCCTGTCCCTGGTGCGTGACGCGGCGGCCCGGCTGCCCAATGGCGAGGGGACGAGGGCTGAGATCTGTGAGCTTCTCAAAGACTCCCAGTTCCTGGCTCCTGATGTCACCAGCGCTCAGAAGGCGAGCAGTAAGGAGGGTGGCGTGAAGACACCTGGGCCAGGGGAACCGGGGCAGATCCTGGGCACAGAGCCCGGTGCCGTACCAGTCCCAGCCCTGCCCCCCACGCCCACCACCCCCACGCCGGTGACTTCCGGCATGCCCCGCTCCCCTCCACCCTCGGCCGGCACCCCCAGCAAGAGCGGACCTGACAGCGTCAAGGCCAGCCCCAGTGTCCTGCTGGTGTCCCCTCCCTCGATGCCCCAGCTGGGCACCCTCCTCTCCGCCAGCCAGTCAGGCCCGCAGTCCTCCCAGGCTGGGGGTCCGCAGCCTGCTGCACGGGTAATGGCCCACCCGGGGACGGGCACCCTGCCACAGGTGCGCGTGGTCACAGCGCAGCCCGGCCTCACCACTTCCTCTGGCGGGCAGCAGGCCACACTGGTGCACCAGACCCAGCACCAGATCCGGCTGCCCGTCACCGTTGCACACACCAAGGGCATCACCCAGACGGTGGTGACTCTACCTTTGAGGACCCAGTCTGGCAGCAGCCCGGTGCAGGTGCAGGCCGCCCGTGGTCAGACCGGGCTCACCGTGACCGGCCTGGCCACTGTCGCCAAGTCTTCGGCCGGTGTGCCCCCCGGCAGCGCCGCTACCCAATCCACCGCCACCATGCTGCAGGGCGTCAGCGGGCAGAACATCATCAAGCAGgtggcGATCACGGGGCAGTTGGGCATGAAGTCCGGGCAGCCGGGGACGGGCATCCCCCTGACCGCCACCAACCTGCGCATCCAGGGCAAGGACGTGCTGCGCCTGCCGCCTTCCTCCATCACCACGGACGCCAAGGGGCAGACGGTGCTGCGCATCACGCCAGACATGATGGCCACCCTCACCAAGTCCCCCGTCACCACCGTGAAGCTCACGCCTGACATGCTGAgcgcggcggcggcggcagccGGGGGCAGCGGGCCGAAGGGCATCTCCGCCACCCTGCACGTCAcgccctcctcttcctccgccACCTCCACCAACgcgccctcctcctcctcagctgAACACCACGGCATCAAGACCCAGGGGGGCGGTGCCACGCTGGTGAAGGTGCACCCCGACCTGAAGGCCACCGGGGACGGCACCGCCATCCGCCTGATGCCCGCGCTGGCCGAGCAGAAGGCCAAGTCGCTGGCGTCCGTGGGTTCTGCCGACGCCAAGCCGCCCACCACCATCCGCATCATGCCCGGCCTCAGCGTCATCCACAACAAGCCGGGCCAGACCATCACCGTCTCCACCGCCGCCACCGCCAAGACCGCCTCCTCCGGGGCCGCCACCTTCACCATCGCTACGGGGGCCAAGGGCGTGACCGTGGGGCCCTCCTCCGTCAGCAGCACCGCCCTGTCGCTGGGCTCGGGCACGGCCACCGTCCGGCAGGTGCCCGTCAGCGCCACCGTGGTGTCCAGCACCCAGCCGGGGAAGCTGCCGGCCCGGATCACGGTGCCCCTGTCGGTGCTCAGTCAGCCCCTGAAGAATAAGAGCATGGTGACCACCCCCCTGCTGAAGGGCAACATCGGCACCAACATCAGCAGCCTGGGCCGCAACATCATCCTGACCACCATGCCGGCCGGGACCAAACTGATCGCCGGGAACAAGCCGGTGAGCTTCGTCACGgcgcagcagctgcagcagctccagcagcagggCCAGGCCACGCAGTGGGGGTTAAAAAGAAGACGCGGCTCGCACCCCCCTGGGGACGGGCAAGGGCGATCACGGGACGATCTGGTGAACGAGTGA

Function

GO: NA

KEGG:

id description
K11671 NFRKB, INO80G; nuclear factor related to kappa-B-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU11451 lncRNA upstream 101467 54212447 ~ 54212655 (+) True G9250
TU11450 lncRNA upstream 102699 54210909 ~ 54211423 (+) True G9249
TU11449 lncRNA upstream 103416 54210341 ~ 54210706 (+) True G9248
TU11448 lncRNA upstream 104204 54209716 ~ 54209918 (+) True G9247
TU11447 lncRNA upstream 106187 54207621 ~ 54207935 (+) True G9246
TU11512 lncRNA downstream 56627 54384226 ~ 54444517 (+) True G9298
TU11600 lncRNA downstream 142419 54470018 ~ 54474840 (+) True AMCG00004595
TU11649 lncRNA downstream 273019 54600618 ~ 54601737 (+) False AMCG00004604
TU11640 lncRNA downstream 281301 54608900 ~ 54611343 (+) True G9399
TU11680 lncRNA downstream 340629 54668228 ~ 54674910 (+) True G9423
AMCG00004584 mRNA upstream 2184 54308248 ~ 54311938 (+) True AMCG00004584
AMCG00004586 mRNA upstream 11545 54294934 ~ 54302577 (+) True AMCG00004586
AMCG00004580 mRNA upstream 32719 54257568 ~ 54281403 (+) True AMCG00004580
AMCG00004578 mRNA upstream 213374 54077164 ~ 54100748 (+) True AMCG00004578
AMCG00004577 mRNA upstream 289966 54016361 ~ 54024156 (+) True AMCG00004577
AMCG00004588 mRNA downstream 18903 54346502 ~ 54354976 (+) True AMCG00004588
AMCG00004587 mRNA downstream 49650 54377249 ~ 54381369 (+) True AMCG00004587
AMCG00004597 mRNA downstream 57992 54385591 ~ 54394043 (+) True AMCG00004597
AMCG00004600 mRNA downstream 73366 54400965 ~ 54401879 (+) True AMCG00004600
AMCG00004594 mRNA downstream 89083 54416682 ~ 54421454 (+) True AMCG00004594
TU11395 other upstream 280815 54032031 ~ 54033307 (+) True G9197
TU11293 other upstream 464368 53847922 ~ 53849754 (+) False G9129
TU11276 other upstream 470263 53648011 ~ 53843859 (+) True G9128
TU11303 other upstream 547012 53766543 ~ 53767110 (+) True G9132
TU11273 other upstream 670524 53636039 ~ 53643598 (+) False AMCG00004563
TU11499 other downstream 23358 54350957 ~ 54352720 (+) False AMCG00004588
TU11498 other downstream 25583 54353182 ~ 54353945 (+) False AMCG00004588
TU11514 other downstream 67192 54394791 ~ 54395300 (+) True G9300
TU11647 other downstream 273019 54600618 ~ 54629207 (+) False AMCG00004604
TU11698 other downstream 400209 54727808 ~ 54734682 (+) False AMCG00004606

Expression Profile