RNA id: TU4463


Basic Information

Item Value
RNA id TU4463
length 468
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G3690
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 21089595 ~ 21090254 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggaaaatgctatgtctggcgcaaacccaacacctctcatcaccccgagaacaccatccctacagtgaagcatggtggtggcagcatcatgctgtggggatgttttttttttgtttgttttttgttttttgttttttttaatcggcagggactgggaaactggtcagaattgaaggaatgatggatggcactaaatacagggaaattcttgagggaaacctgtttcagtcttccagagatttgagactgggatgagggttcaccttccagcaggacaatgaccctaagcatactgctaaagcaacactcgagtgatttaaggggaaacatttaaatgtcttggaatggcctagtcaaagcccagatctcaatccaactgagaatctgtggtgtgacaaaagattgctgtacaccagcggaactttgcatcttcaaagtggtaggcatgttgtgtaaatcaaatgataca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4443 lncRNA upstream 161793 20925812 ~ 20927802 (+) True G3670
TU4439 lncRNA upstream 176607 20912142 ~ 20912988 (+) True G3666
TU4432 lncRNA upstream 181078 20903572 ~ 20908517 (+) True G3661
TU4413 lncRNA upstream 229301 20835737 ~ 20860294 (+) True G3648
TU4397 lncRNA upstream 288449 20777059 ~ 20801146 (+) True G3635
TU4545 lncRNA downstream 505602 21595856 ~ 21598430 (+) True G3754
TU4549 lncRNA downstream 510378 21600632 ~ 21600860 (+) True G3757
TU4559 lncRNA downstream 642237 21732491 ~ 21732699 (+) True G3767
TU4562 lncRNA downstream 660273 21750527 ~ 21759799 (+) True G3770
TU4577 lncRNA downstream 800269 21890523 ~ 21901648 (+) False AMCG00003853
AMCG00003836 mRNA upstream 756059 20333123 ~ 20333536 (+) True AMCG00003836
AMCG00003835 mRNA upstream 956240 20132773 ~ 20133355 (+) True AMCG00003835
AMCG00003833 mRNA upstream 1144578 19944010 ~ 19945017 (+) True AMCG00003833
AMCG00003832 mRNA upstream 1145758 19933174 ~ 19943837 (+) True AMCG00003832
AMCG00003827 mRNA upstream 1458148 19630470 ~ 19631447 (+) True AMCG00003827
AMCG00003844 mRNA downstream 198206 21288460 ~ 21296218 (+) True AMCG00003844
AMCG00003843 mRNA downstream 223820 21314074 ~ 21333224 (+) True AMCG00003843
AMCG00003845 mRNA downstream 257973 21348227 ~ 21438679 (+) True AMCG00003845
AMCG00003846 mRNA downstream 349860 21440114 ~ 21447121 (+) True AMCG00003846
AMCG00003847 mRNA downstream 401630 21491884 ~ 21535758 (+) True AMCG00003847
TU4227 other upstream 1720329 19368193 ~ 19369266 (+) False AMCG00003828
TU3794 other upstream 2937281 18146660 ~ 18152314 (+) True G3108
TU3792 other upstream 2946962 18137755 ~ 18142633 (+) True AMCG00003779
TU3719 other upstream 3405607 17681817 ~ 17683988 (+) True G3047
TU3283 other upstream 5049955 16035663 ~ 16039640 (+) False AMCG00003712
TU4541 other downstream 458947 21549201 ~ 21549533 (+) True G3751
TU4563 other downstream 655596 21745850 ~ 21760630 (+) True G3771
TU4606 other downstream 832382 21922636 ~ 21923787 (+) True G3799
TU5028 other downstream 2619984 23710238 ~ 23713134 (+) False AMCG00003898
TU5311 other downstream 3593146 24683400 ~ 24683920 (+) True G4360

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU3701 True 340 lncRNA 0.48 1 NC_035897.1 10783148 ~ 10783487 (-)