RNA id: TU8872


Basic Information

Item Value
RNA id TU8872
length 1812
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G7231
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42087791 ~ 42089653 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgtgtgtgttgttgttttttttttgggaccTGACATTTAATTTCAGGAAATTCAAACCCCTTGTCATGTTGAATTCCTACAGAATTTGCCCATCATCCAGCACTACTGCATTTAAGCTAAATGGCCTTTTTTGCCATTCTGTATTGCTGTCGTTGTGACACAAATGTGTCATGATGGTTATACATGTTCATTCACTTGAATCTGATAGTCCTGCAGGTGCACTTGTCGACTAATTCTGTTCTACCTCAAGGTGTCTTTGTGCAGAAGCTACAGCTTGTAAAAGACAGTTAATCTTATAGTgggaataatatattttgtttgcttgagCCCCCCCAGTTTTTATCACCAGGACCATCAACATTAAAATAGGGATTCACTTTTCCCTTGAAAGCAGCTGTTTCCCCCCTCCAATCCACTTTTGATTTACAGTTAATGTGTGCAGTCCCGCAGCATTGAGCAGTGGCACTCCTGCACTCATGAGATCTTTAAATCCTATTGCTAACATTTTGCCAGACCAAATGCACATTATAACTTCATCCACAAgtgcatgttttctttctttgtttgacaatacatttacagtgctattttaaaaataaaatatgattcaaGTACTGGATCACATACATATTTGTAGTCCTTCCGTTGCCCATTCCTGTAGCATTGTCAATGTGTATTGTGGTGTGTACATGTCTGAGCCATACAACGCTGTGCTCCTGCCATTGCATTGCCATGTGTTTCTGGTCTAATACATGTGCTGAAACAAAAGATGtatatgttgtaaaatgtaacgCACAGTCTGATAATAGGCTGCAATACATGAACCTTCAATGCTTACAGGTTGGGATGAACTGTGTTGCTTATTTTAACGGCTTTATTCCCATTATCAGTTTTTCCTCAGGGTCAGACAGTGCTCTGAGAATGTATGTACTTCATAGTCCAATCCCTATTGTACTGTTACTAACATATTGTACGCATCACATTTTGACTACACAGTATTTGTAGCCCTTACAGTAGTGGTTCAGTGTTTCTAATAAGACTGAATGTCAATGAAACCAGTCTATTTCGCGGTTTCTTATGCactgaataaatgttttgtttggtaGTACTTTTTTCCGTTCAAACTGAAGACTAAAAAAGGTATGTGATGGTGCAGAAACTGCACCGTACTGCCAAGCCATGGCTAATCAAACCTGatttcaccccccccaccacaccccTCTTTATGTTTGAATGTGCTTCAGACTTAACTATTTGGTGCAGTTTAGTACCCGTGTACAGCCTATGTGGGACCATTCATCGGCTCTGGTACCTCTTCACTGCAAATTTCTAAAGATGATTATTCTTATGTGATTTTATattggggagggggtgggggggttaggCTGCCACAGCTGCATtagtacaatattatattacacaAATCTACACGGGGTTCTTCACTGTAAAGGATCACTGTCACAGAAGCATTCTGTAGcaggttttaaatgtgtaaatgccgtgtcattgtttgttttaatggccTAACATTCAAACTTCAATAAAGGTGGAAAATAAGATGTGCGTCTCCCCTAGTCACTGAAATTCTGTTCTCCAGATACTGGCTATGCagcagcattatatatatatatatattttttgtttttttgtttgtttgtttgttttgttttgtttggtgaGCTGgagaaagttttttgttttaaatgtgattaaGGTATTATTTTTTGGACATTTGTGCACAATCAGTTATAGAGACATTGTGCTTGTATGTTGTGTAGACTATGCATGCctacaatattacaaataaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8861 lncRNA upstream 20066 42065497 ~ 42067725 (+) True G7221
TU8805 lncRNA upstream 121558 41966014 ~ 41966233 (+) True G7182
TU8686 lncRNA upstream 481032 41605110 ~ 41606759 (+) True G7101
TU8687 lncRNA upstream 558483 41523053 ~ 41529308 (+) True G7102
TU8666 lncRNA upstream 719313 41367145 ~ 41368478 (+) True G7084
TU8918 lncRNA downstream 243772 42333425 ~ 42336643 (+) True G7272
TU8928 lncRNA downstream 275215 42364868 ~ 42365654 (+) True G7278
TU8939 lncRNA downstream 286972 42376625 ~ 42379961 (+) True G7288
TU8944 lncRNA downstream 385923 42475576 ~ 42475886 (+) True G7293
TU9117 lncRNA downstream 1146165 43235818 ~ 43237653 (+) True G7418
AMCG00004300 mRNA upstream 3949 42069528 ~ 42083842 (+) True AMCG00004300
AMCG00004301 mRNA upstream 22380 42047643 ~ 42065411 (+) True AMCG00004301
AMCG00004298 mRNA upstream 42700 42029377 ~ 42045091 (+) True AMCG00004298
AMCG00004299 mRNA upstream 63051 42010685 ~ 42024740 (+) True AMCG00004299
AMCG00004296 mRNA upstream 123317 41949371 ~ 41964474 (+) True AMCG00004296
AMCG00004303 mRNA downstream 218 42089871 ~ 42098322 (+) True AMCG00004303
AMCG00004304 mRNA downstream 120777 42210430 ~ 42214749 (+) True AMCG00004304
AMCG00004305 mRNA downstream 130367 42220020 ~ 42259741 (+) True AMCG00004305
AMCG00004309 mRNA downstream 248861 42338514 ~ 42347082 (+) True AMCG00004309
AMCG00004308 mRNA downstream 260578 42350231 ~ 42355400 (+) True AMCG00004308
TU8679 other upstream 580560 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 5087633 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 5196045 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 5313268 36774001 ~ 36774523 (+) True G6314
TU7524 other upstream 5812861 36272192 ~ 36274930 (+) False AMCG00004167
TU8899 other downstream 122857 42212510 ~ 42216362 (+) False AMCG00004304
TU9000 other downstream 599126 42688779 ~ 42691109 (+) True G7329
TU9559 other downstream 3872357 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 6057235 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 6842797 48932450 ~ 48934095 (+) True G8099

Expression Profile