RNA id: AMCG00005235


Basic Information

Item Value
RNA id AMCG00005235
length 3642
RNA type mRNA
GC content 0.57
exon number 22
gene id AMCG00005235
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19762168 ~ 19771973 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGTCAGCGGTCGTGGTTCAGTCTCATCACATCTTTGGCGTCCGGAGGGGGGTGACCAACAACCTGTGTTACTTTGATGAGCAAACGGTCATCTTCCCATCGGGCAACAACTGTGTGCGCTACAACATCGACCAGAAATGGCAGAGGTTCATTCCAGGCACGGAGAGAAGTCAGGGCATGCAGGCCTTGGCCATCAGCCCCAACCGGCGCTACCTGGCAGTGTCCGAGCGGGGGGAGAAGGGCACCATCACCGTGTATGACCTGCAGCACGAGCAGAGTCGCAAGAGGAAGGTCCTGAGTGCCGGGGACCCACCGGCGCAGGAGTTCGTCTGCATGGCCTTCTCCCCAGACTCCAAGTACCTCATCGGCCAGTCGGGGGCCCCAGACTGGACCCTCTTCTACTGGATGTGGGAGAAGCAGAAGGTGCTGGCCTCGGTGAAGACCAGCAGCACGACCAATCCCATCTGCCAGGTTAGTTTTAACCCTCAGGACAACACGCAGATCTGTGTCAGCGGCAGGGGGGTGTTCAAGCTGTTCCGCTATGCAGAGGGGGTCCTCAAACAGTCCAACTTCCAGAAGCTGGAGGCACACAACGTCCTGTCCCACGCCTGGCTGTCAGATGAGCGTGTCATCGTCGGCACGGAGTCCGGGAGGCTCCTGGTAATGGAGGGAGGAGATCTGCGCTGGGAGATGAGTGTGGCTCCGAAGCCCTCCACCCAAGACAGCAACAGATCGCTTGGGAAGAAAAATGTGGACGAGCCCCTCTCCGATGCCCTGCCTCGCGTATCAGCCATCGCTGCCTATTCCAAGGGCTTCGCCTGCGCCGCCGGGCCGGGGACCGTCTATCTGTTTGAGAAGACCGAGGAGAAGGACCACTACCGGAAAACCAGGGAGATCCGGATTCCCCAGGATCAGTGCAGCAATGAGCCGAGCACCGCAGAGGAACAGGAGATTGCCACTCTGTGTATCAGCCCCTCGGAGGAGACCCTGGCGACCAGCACGGGCCGGGGCCAGCTCTACAGCATCACTCTCTCCTCGGCAGAGATGAGCAAGGGGGAGCCGGCGCACTTCGAGTTCCTATCGCACTCCTTCCACTCGGGCACCATCACCGGCCTGTCCGTCTGCATCCGCAAACCCCTCATCGCCACCTGCTCCCTGGACCGCTCGGTGCGGATCTGGAACTTCGAGACCAATGCCTTGGAGCTCTATAAGGAGTTCCCGGAGGAGGCCTACAGCATCGCGCTGCACCCGTCCGGCCTCTATGTCCTGGTGGGATTCTCAGATAAACTGCGGCTGATGAACCTTCTCATCGATGACATCAGGACCTTCAGGGAGTTCACTGTGCGCGGGTGCCGGGAGTGTGCGTTCAGCCACGGCGGCCACATGTTCGCAGCGGTCAACGGGAACGTCGTCCACATCTACTCGACCACCACCTTCGAGAACACACAGAACCTCAAGGGCCACAACGGCAAGGTGCGTGCCGTAGCGTGGAGCGAGGACGACAGCCGGCTGGTGTCGTGTGGGATGGACGGCGCCGTCTACGAGTGGAACACGCTCACCAGCAAACGGGAGTCAGAGAGCGTGCTCAAGTCCTGCAGCTACACCGGCGTCACCCTCTCACCCGACGCTAAGACCGTCTTCGCCGTGGGCACCGACTGCACCCTGAAAGAGATCACAGACTCTCAGATCCTGCGCGAGGTGCAGTCGGACGGGGTGCCATATATCAACCTGGTGATGTCACGCTCCGGGCGCATGCTGTTCACTGGCACATCCATCGGCACCATACGGGCCATCAAATACCCCTTGCCTATACAGAAAGACTGGGTTGAATACCAGGCTCATGCGGCGCCCGTGACAAAGATGGCCATCACGTACGATGACCAGTTCCTGCTGACCGTCTCAGAGGACGGGTGCTTGCTGGTCTGGAAGATCAATGACAAGGAAGGGCGAGGCATGAAACGGGAGAAGGAGGTCGGCTACACCGAGGAGATCCTCATCACCAAATCTGACCTGGAGGAGAAGAACCAGGTCATGCTGGAGCTGAAGACAAGGGTGGAGGAGCTCAAAATGGAGAACGAGTACCAGCTGCGACTGAAGGACATGAACTACAACGAGAAAATCAAGGAGCTGACGGAGAAATTCATTCAGGAGATGGAGTCCCTGAAGACGAAGAACCAGGTCCTCAGAactgagaaagagaaacaggcACTGACTCATGAGGAGGCGATGGCCGAAGTGATGGAAAAACATTCGAAGGAGCAGCAGGATTTAGagTCGACCAACAACCAGAAGCTGATGCTGGAGTTCGAGAAGTACCAGGAGCTGCAGGTGAAGTCCCAGCGCATGCAGGAGGACTATGAGAAACAGCTGCacgagatggaggagagcaAGACCCTGGCGCTGGAGGAGCTGACGGAGTACTACGAGGCCAAGCTGCAGgagaaactgctgctgctggagcagTGTCAGGACGAGTCGCGTGAGCAGGTGCGCGAGTTCGAGGAGTCAAAGAAGCAGATGGAGGAGGACGGGGACCGCGAGATCCAGGACATCCGGATCAAATACGAGAAGCGGCTCCGGAACGAGAAGGAGGCCAACCTGCGGCTGAAGGGCGAGACCGGGATCATGAGGAAAAAGTTCGGCAGCCTGCAGAAGGAGATCGATGACAGGAACCTGGATATCGATAAGCTTAAAACAGAGCAGCAGAAACTCCAGGGGGTCATCAAGTCTCTGGAGAAGGACATTCTGGGTCTGAAGAAGGAGATCCAGGAGAGAGACGAGACCATTCAGGACAagGAGAAGCGCATCTATGacctgaagaagaaaaatcagGAGCTGGAGAAATTCAAGTTTGTGCTGGACTACAAAATCAaagagctgaaaaaacaaatcgaACCCAGAGAGAACGACGTCAGGGAAATGAAGGAGCAGATTCAGGAGATGGAGGGCGAATTGGAGAGCTTCCACAAGAGCAACACTCAACTGGAGCTGAACATCACGGAACTCAAACAGAAACTCAAAGCCACGGACAAGGAGATGCACAAGGAGATGCAGAGGGTTCGAGACGTGGAGGCGTTGGTGAGGAGGTTCAAAACGGACCTGCACAACTGCGTAGGTTTCATTCAGGAGCCCAAGAAACTGAAGGACTCCATCCGAGAGCTGTACCACAGATACGTCCAGGAGTCCGACGTGGTGGACATTGTGGGAATGGATGCAGATATCCAGCGAGAGTACGCCTCTCAGAGGGAGCACCTGGAGAGGAACGTGGCCTCGCTGAAGAAGAAGCTGGCCAAGGACTCGGAGATCCACAGAGCCGACAACGTCAAGATCATGCAGGAAAACGTCTCCCTGATCAAGGAGATCAACGACTTGAGACGCGAGCTGAAGCTGGTTCGGACTCAGGTTCACGACTACGAAGTGATGAACAGAAAGAACCAGAAGCAGAGTCCCACGGATCTCAGAGCGCTCTCTGCCGACAACTCACGCATTGCGGTGGCCCGGGTGAACTTCGAGCAGGAGGCCGACCGGATCATCGGTCTGCAGCGCGGGGAGATCCAGCGCCTCAGAGAGCAGATCCAGGGCCACAGCCACGCTCTGCGGCCCCCGTCCGGAGGCAAACTCCCGGCCCTCACCGCCTGA

Function

GO: NA

KEGG:

id description
K24729 CFAP57, WDR65; cilia- and flagella-associated protein 57

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184126 lncRNA upstream 1377 19760152 ~ 19760791 (+) True G146350
TU184058 lncRNA upstream 169074 19592750 ~ 19593094 (+) True G146307
TU184057 lncRNA upstream 176512 19585448 ~ 19585656 (+) True G146306
TU184055 lncRNA upstream 186594 19573323 ~ 19575574 (+) True G146304
TU184054 lncRNA upstream 192165 19569473 ~ 19570003 (+) True G146303
TU184234 lncRNA downstream 235443 20007416 ~ 20011135 (+) True G146442
TU184248 lncRNA downstream 252200 20024173 ~ 20026061 (+) True G146450
TU184288 lncRNA downstream 336129 20108102 ~ 20109541 (+) True G146486
TU184340 lncRNA downstream 410381 20182354 ~ 20184643 (+) False G146519
TU184369 lncRNA downstream 544034 20316007 ~ 20333122 (+) True G146544
AMCG00005238 mRNA upstream 6378 19742353 ~ 19755790 (+) True AMCG00005238
AMCG00005237 mRNA upstream 50640 19709336 ~ 19711528 (+) True AMCG00005237
AMCG00005239 mRNA upstream 57851 19701463 ~ 19704317 (+) True AMCG00005239
AMCG00005231 mRNA upstream 198082 19552463 ~ 19564086 (+) True AMCG00005231
AMCG00005232 mRNA upstream 231715 19475285 ~ 19530453 (+) True AMCG00005232
AMCG00005236 mRNA downstream 3506 19775479 ~ 19783604 (+) True AMCG00005236
AMCG00005246 mRNA downstream 44867 19816840 ~ 19836486 (+) True AMCG00005246
AMCG00005248 mRNA downstream 65789 19837762 ~ 19845316 (+) True AMCG00005248
AMCG00005245 mRNA downstream 83616 19855589 ~ 19858614 (+) True AMCG00005245
AMCG00005247 mRNA downstream 107569 19879542 ~ 19884551 (+) True AMCG00005247
TU184056 other upstream 182361 19579573 ~ 19579807 (+) True G146305
TU183561 other upstream 1990643 17765257 ~ 17771525 (+) True G145932
TU183002 other upstream 4377556 15384243 ~ 15384612 (+) False AMCG00005105
TU182286 other upstream 6980998 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 8098800 11662681 ~ 11663368 (+) True G144677
TU184341 other downstream 410381 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 501540 20273513 ~ 20279786 (+) False AMCG00005272
TU184405 other downstream 749676 20521649 ~ 20524819 (+) True G146575
TU184436 other downstream 889953 20661926 ~ 20670169 (+) True G146596
TU184446 other downstream 927513 20699486 ~ 20702404 (+) True AMCG00005286

Expression Profile