RNA id: TU192155


Basic Information

Item Value
RNA id TU192155
length 1696
RNA type TUCP
GC content 0.44
exon number 5
gene id G152588
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2845217 ~ 2849608 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccggacgcgtcccagaggtttttattgtaaaaccaggccgttcTTGGGAGGAgcagcagcgactgtgggtttggcttcttgtttttgttttttaaagacagagcgatagagcctgacacggaaaatacttttgtgtctattttattctttctgctttacatgattaaaaacagcataataaatacacgtttctgttaagaggtattaggaagagctaaacgagtatagacattatattcagacaatcacattcccataagaatacatttccatgtgcaacaataactacatttttgccatttagtattattatcatttgtgctagtatatgtattttaaacggcacaacgTGActgtttctgcagatttgtaactgcaaacaatactttttgctgaatttataatttacttatcaaacgtccttaaccagggcaagttacagttgaaacaaaatacacacgtttcacgattaatcatccagctacaacatagcaggttataattgaactaaagtgtgcgtCTCAGTCATGGAGTTTAGGacttatggacacatttattaaaccagtccttaatgttttagagggaaaccctgatctgctgtatttattcattaatttaacttgcaaatggacacacgttaactgaatcgtgttcgccttcataccgattatctctgcggattgtcctgcacaccattcacacaacacagcctgaaacaccggccagctgttcacaaaatattaatacaatcgcctgctaccgatccgattattatcctccagtttatttttaactagtcagggcactgcaccggtcctgtgttAATAcacggatattaactgtaagcagatagttaaccgtccacaaaacacggacgcttagccagtgaAAATACCCATTTaagcgtccgccagtggaaacagggcattaATGGTGCATCTTTAGGACGTCTCCCCCAGGTCCCTTGTCATTACTACGTGTACTCAATAAGattaataattaagaaacagaCCATGGCAGAATTTTTACAAACTTTATTCTCTGTACATTTCTTGATGAACAGTTTAGATGATGCcaatCTTGTTTGCAACATCCAGGGCATCGTAGTCTGGTGCAAGACGGACGTAGGCCTTCTTCTCACCATCGGgcCTGATCAACGTGTTGACTTTGGCCACATCGATGTCGTACAGTTTCTTGACCGCATGCTTGATCTGGTGCTTGTTGGCCTTGACGTCGACGATAAACACCAAGGTATTGTTGTCCTCTATCTTCTTCATGGCTGACTCAGTGGTCAGAGGGAACTTAATGATGGCATAGTGGTCCAACTTGTTCCTGCGAGGAGCGCTCTTTCTGGGGTACTTGGGCTGCCTCCTCAGCCTCAGGGTCTTGGGCCTCCTGAAGGTGGGGGAGGTCCTGATCTTCTTGCGCTTGTGGCTGTGCACCCCCTTCAGCACGGCCTTCTTCGCCTTCAGGGCCTTGGACTTGGCCTCAGTCTTGGCAGGGACAGCTTCCTTCTTCGCCTTCGGGGCCATCTTAGGAAAGGGAGAGCAAACGGGGTTTCGCACAGTATATCGCAGGGGCCAGGAAGACGAACGCTCGCGAGAGAAACAGACCGGCGCGGTGTGTTCTGGGAGGTGTAGTTTCAGAGCTGTGGCTCGGCACCGTGAAACAATAGTGTTTCTGTTTGACTTGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191902 lncRNA upstream 521872 2255365 ~ 2323345 (+) True G152397
TU191834 lncRNA upstream 898417 1929455 ~ 1946800 (+) False AMCG00005429
TU191670 lncRNA upstream 1329265 1509502 ~ 1515952 (+) False AMCG00005434
TU191632 lncRNA upstream 1383278 1461724 ~ 1461939 (+) True G152198
TU191630 lncRNA upstream 1386470 1458154 ~ 1458747 (+) True G152196
TU192219 lncRNA downstream 222342 3071950 ~ 3090655 (+) True G152644
TU192220 lncRNA downstream 222342 3071950 ~ 3090655 (+) False G152644
TU192232 lncRNA downstream 334213 3183821 ~ 3185332 (+) False G152655
TU192233 lncRNA downstream 335147 3184755 ~ 3186988 (+) True G152655
TU192234 lncRNA downstream 335147 3184755 ~ 3185332 (+) False G152655
AMCG00005493 mRNA upstream 516 2834497 ~ 2844701 (+) True AMCG00005493
AMCG00005502 mRNA upstream 206309 2583399 ~ 2638908 (+) True AMCG00005502
AMCG00005503 mRNA upstream 275507 2566389 ~ 2569710 (+) True AMCG00005503
AMCG00005504 mRNA upstream 279717 2546393 ~ 2565500 (+) True AMCG00005504
AMCG00005484 mRNA upstream 324263 2512222 ~ 2520954 (+) True AMCG00005484
AMCG00005494 mRNA downstream 484 2850092 ~ 2857112 (+) True AMCG00005494
AMCG00005492 mRNA downstream 17363 2866971 ~ 2871873 (+) True AMCG00005492
AMCG00005490 mRNA downstream 43697 2893305 ~ 2896669 (+) True AMCG00005490
AMCG00005509 mRNA downstream 302073 3151681 ~ 3171935 (+) True AMCG00005509
AMCG00005506 mRNA downstream 323971 3173579 ~ 3179680 (+) True AMCG00005506
TU192049 other upstream 334541 2503910 ~ 2510676 (+) True AMCG00005481
TU192048 other upstream 334541 2503993 ~ 2510676 (+) False AMCG00005481
TU191823 other upstream 1041314 1799811 ~ 1803903 (+) True G152337
TU191729 other upstream 1096283 1745960 ~ 1748934 (+) True G152267
TU191589 other upstream 1465915 1376468 ~ 1379302 (+) True AMCG00005418
TU192254 other downstream 417134 3266742 ~ 3270839 (+) False AMCG00005498
TU192255 other downstream 417134 3266742 ~ 3270839 (+) False AMCG00005498
TU192563 other downstream 1433452 4283060 ~ 4284963 (+) False AMCG00005538
TU192612 other downstream 1710605 4560213 ~ 4561484 (+) False AMCG00005546
TU192781 other downstream 2365215 5214823 ~ 5221915 (+) False AMCG00005583

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00037655 False 563 mRNA 0.49 5 NC_007132.7 26071874 ~ 26074640 (+)
grasscarp (Ctenopharyngodon idella) TU47409 False 405 lncRNA 0.44 4 CI01000006 4121278 ~ 4123226 (+)
eurasian perch (Perca fluviatilis) TU47409 True 327 lncRNA 0.42 1 NC_053115.1 2074307 ~ 2074633 (-)
mexican tetra (Astyanax mexicanus) TU47409 True 342 lncRNA 0.35 3 NC_035900.1 7403169 ~ 7404536 (-)