RNA id: TU194148


Basic Information

Item Value
RNA id TU194148
length 2130
RNA type TUCP
GC content 0.47
exon number 2
gene id G154142
representative True

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 9090422 ~ 9092573 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaaatgacaacgGAATTCCTTACAAGTGTTCTTCAAACCAAAACAGATGACTCCATTTTAAAAGAGTAATGAACTTAATTGGCAGTCTCGCCAACTATTTATCTGATCcgattgctttttaaaaacaaaatggaaacgGTGAACTCTCACAAGTCAAGACACGAGAACTGCCAATAGGAGCAACTTATATGatcaatttactttttattgtaaatCCTGGCTGGTTGATTCAAAGTGAGTGTTCAACCTGCATGTCAAACCACAAACCTTAACTGCTTGTAGTAGCTGAAGTGATAGATTTGGGTTCCTTTCCCACATGGTTAATCTTTTCAGAGTGACAAAAGATATAACATTAACAAAAGTAGTGCATACccttataaaataaagtaccttttatttgtgttgtataGTTTGGATTGAGAGGATAAGCTTCATCTGCTACATCTGTGGATGAACTTTAGCACCTTTTGTAACTGGCAACGATAGTAGTTTTGCCATACTAGCTGGAATAAAAGCCTGCCGACATGATTTTGAAGTAATGGAATAACACTGGAAAGTAAGTTCTTTTCATAAAggattcataataaaataaaataaaaacgtctCTTAACTTGAGCACATTAATCAATTGCCGAGACATACCAAACAAAGTAATGCACATTCAACCAATACAAAATGAGACATGAATGCAGGGAAGATAATATAGATACCCAAACTCAATCTGATAAAACAAACTTATTTGCATCAGATCCTTATTCCAGTCCTGTAAGATGACGAACACCACCATGGCATTACACAGATGCAGAGAGGGAACTACGAGACCACAGCCGCCTACAGAGCGTCTTCACAAGAGACAAGAAAGATACAAGACTcagataataacaataacaataataagaggTTATTTTATGCTGAAAACAAGACACAGTATTTGAACCAAGAGAGAAGGCAAGGAAATATGACAGGCATGTTCTGTTAAtctgttctctccACTTGCCTCCTGCCTTTCGAAAGAAGCCGTACAAAGGCCAGACCCAAGACAGAGGGCAGTgtctgcgtgtgcgtgtttttgtgtgtatatctgaACACCCATTCTTTAAATACCTCGCAAATTCAACCTCTGGAAAAAGGGACCTCTCGAGGGAGTGTATTTCTGGTACAAAAACATAATGGGTCAACGTTGGAAGGTCTTTAATTTAGTCTTGTATACAACTTCACTGACATTTGCGTGGTGCAGTGTTTTAATACAGAAGTCCAAAGATCGAAGAGGCCAGCAGTTCTAGTCTCCAGGGTGGTGCGACGGGGGCGACCTCCGGTCTTTCTCGTGGGTCCGGACCGGTGAGCAAGGTTCGCTTCAGAACGAGGGACAGGGGCTGCAGGACAGGCGAGGCTGTCGGGTGAACAAATAGAGACACTGCAAAACAAGAGGATGCCATCgtactgcaaaacaaaacaagaacagaatGGGAACCAAGAAACCGACAAACACTGAGTTAAGGGTCTTCCGCTTGAGATGTGTACACTTATGATCCAATTAGGGATCGGGCACCCGAGCTGCACAGCCCCACGGAGTTGGAGGGATGCAGGGAAAGCACAAGAAGTTATGCTGGATGTTTGGCGCAGTCTTAAAGTCTCTCTCGGTGCTCCAGGGAGTTTGTATCGGATGATCGGAGAAGTCACGGAGGGCTCGCGTAGGAATGGGTAAGGTTTGTGCCGCGGTGGTTGAGAGTCTGTGCCCCAGAGCGAGGGTGTGGGAGGGAGCGGGCGGCGGCGGGGCCTGGAGAGGGGATAGAGGAGCGAGTCCTCCGTCtgccccgtctctctctctctctctctctctctctcaggagtcGCTGTCAGAGCCGTTGCTGCTGTCTCTACTGATCTCGATCTGCAGCGAGGGCAGGTTGTCCAGGCGGCTCTTCTTCTGGTGggtcttctccttctccttgaTCATGGCGCCCCACACCCTCTGCAGCTCCGTGTCCTCCTCCTCGGCTCCCGAGCCCGCGCTATCCCCCCTGGCTGCCGCCGCGCTGCCCGGCGCCGTCGTCCCAGCCGGCGACCTCTTCACCGGCACCTTGTCCTTCTGGCTGGAGCCGAGCCTGCTCCACAGACTGCTCActg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194132 lncRNA downstream 65543 8987281 ~ 9024879 (-) True G154126
TU193982 lncRNA downstream 360273 8729803 ~ 8730149 (-) True G154010
TU193946 lncRNA downstream 502200 8574192 ~ 8588222 (-) True G153980
TU193663 lncRNA downstream 1068782 7984240 ~ 8021640 (-) True G153779
TU193660 lncRNA downstream 1106491 7982030 ~ 7983931 (-) True G153778
TU194160 lncRNA upstream 3098 9095671 ~ 9103798 (-) False G154150
TU194161 lncRNA upstream 3098 9095671 ~ 9108363 (-) True G154150
TU194159 lncRNA upstream 5599 9098172 ~ 9103435 (-) False G154150
TU194169 lncRNA upstream 36197 9128770 ~ 9139826 (-) True G154157
TU194270 lncRNA upstream 232949 9325522 ~ 9330533 (-) True G154234
AMCG00005747 mRNA downstream 36996 9043131 ~ 9053426 (-) True AMCG00005747
AMCG00005748 mRNA downstream 59744 9027129 ~ 9030678 (-) True AMCG00005748
AMCG00005744 mRNA downstream 156964 8906411 ~ 8933458 (-) True AMCG00005744
AMCG00005743 mRNA downstream 195107 8886096 ~ 8895315 (-) True AMCG00005743
AMCG00005797 mRNA downstream 266386 8821543 ~ 8824036 (-) True AMCG00005797
AMCG00005776 mRNA upstream 89942 9182515 ~ 9192061 (-) True AMCG00005776
AMCG00005778 mRNA upstream 101859 9194432 ~ 9201293 (-) True AMCG00005778
AMCG00005779 mRNA upstream 111342 9203915 ~ 9206461 (-) True AMCG00005779
AMCG00005777 mRNA upstream 181212 9273785 ~ 9282740 (-) True AMCG00005777
AMCG00005786 mRNA upstream 241486 9334059 ~ 9339730 (-) True AMCG00005786
TU193709 other downstream 965737 8091748 ~ 8124685 (-) True G153806
TU193670 other downstream 1089082 7999336 ~ 8001340 (-) False AMCG00005704
TU193605 other downstream 1302101 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 2593851 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 3007556 6081235 ~ 6082866 (-) True G153342
TU194289 other upstream 332717 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 1222807 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 1222807 10315380 ~ 10351719 (-) False AMCG00005850
TU194822 other upstream 1751268 10843841 ~ 10912745 (-) False G154677
TU194821 other upstream 1813722 10906295 ~ 10910432 (-) False G154677

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000006_01666458_01679245.mRNA True 2308 mRNA 0.47 11 CI01000006 1666241 ~ 1679917 (+)