RNA id: TU193670


Basic Information

Item Value
RNA id TU193670
length 691
RNA type TUCP
GC content 0.49
exon number 4
gene id AMCG00005704
representative False

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 7999336 ~ 8001405 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAAGTTCCGGATTAGTATCAACACGGCGAAGGTCGAGCGCAGTCGCCACAGCGGAGAAGGACGAGGAAACACCGGCGTCGTTTCGTTTTTATTTAGTCTTTCACTCTCAAGGAAAAAATGCCCAGAGGAAGCAGAAGCAGGGTGTCCAGGGCGGCCGAGCCGGCACAGGCTGACGTCACATACCAGGAGCCCCTGCCCGCGGCTCAGCCCATgtaccagcagcagcagcagcagaggaaCCCGTGCGAGTACGAGCTGAGACAGTTCATCGACTGCGCGCAGAACCAGAGCGACCTGAAGTTGTGCGAGGGCTTCAGCGAGGTGCTCAAGCAGTGCAAGTTCTCCAACGgAATGGCATGAACATctggagcaggaaaaggcatcTGAAAGGGTTTAAATGATACGAAGCATGTCTGACGCGCAGTGAATAGTTAATTTAGGTGACGCTATTCTCCTGTAGGCTGCTTTCCATCGGGCATGTGATTCAACTTATTTAACTTCCTAGGTGGAAATGTGTCTGAAATGGGAGGCACTTCCTTTTAAGAATAACGGAGGGGAAATcgttgttttcagttttgatttgtctGGAGATGCAGAGATGTCATGAAGAATGTGCTTGTGGACTTTATTTTCCCGgtgaaagcttttatttttgaatcaaaataaaaatctcccATAACTTTGTCACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU193660 lncRNA downstream 15405 7982030 ~ 7983931 (-) True G153778
TU193615 lncRNA downstream 124294 7874787 ~ 7875042 (-) True G153742
TU193539 lncRNA downstream 720571 7278504 ~ 7278765 (-) True G153681
TU193533 lncRNA downstream 797050 7179628 ~ 7202286 (-) True G153678
TU193483 lncRNA downstream 859542 7139180 ~ 7139794 (-) False AMCG00005685
TU193946 lncRNA upstream 572852 8574192 ~ 8588222 (-) True G153980
TU193982 lncRNA upstream 728463 8729803 ~ 8730149 (-) True G154010
TU194132 lncRNA upstream 985941 8987281 ~ 9024879 (-) True G154126
TU194160 lncRNA upstream 1094331 9095671 ~ 9103798 (-) False G154150
TU194161 lncRNA upstream 1094331 9095671 ~ 9108363 (-) True G154150
AMCG00005702 mRNA downstream 236 7989356 ~ 7999100 (-) True AMCG00005702
AMCG00005717 mRNA downstream 21556 7976058 ~ 7977780 (-) True AMCG00005717
AMCG00005716 mRNA downstream 33076 7954131 ~ 7966260 (-) True AMCG00005716
AMCG00005715 mRNA downstream 49202 7918679 ~ 7950134 (-) True AMCG00005715
AMCG00005718 mRNA downstream 97964 7896346 ~ 7901372 (-) True AMCG00005718
AMCG00005701 mRNA upstream 22192 8023532 ~ 8025712 (-) True AMCG00005701
AMCG00005703 mRNA upstream 35688 8037028 ~ 8066223 (-) True AMCG00005703
AMCG00005734 mRNA upstream 101605 8102945 ~ 8104214 (-) True AMCG00005734
AMCG00005733 mRNA upstream 103126 8104466 ~ 8107046 (-) True AMCG00005733
AMCG00005706 mRNA upstream 344820 8346160 ~ 8363063 (-) True AMCG00005706
TU193605 other downstream 211015 7785554 ~ 7788321 (-) True G153733
TU193235 other downstream 1502765 6490255 ~ 6496571 (-) True AMCG00005674
TU193087 other downstream 1916470 6081235 ~ 6082866 (-) True G153342
TU192831 other downstream 2697138 5300769 ~ 5302198 (-) True G153130
TU192573 other downstream 3709444 4288665 ~ 4289892 (-) False AMCG00005539
TU193709 other upstream 90408 8091748 ~ 8124685 (-) True G153806
TU194148 other upstream 1089082 9090422 ~ 9092573 (-) True G154142
TU194289 other upstream 1423950 9425290 ~ 9434940 (-) True G154250
TU194621 other upstream 2314040 10315380 ~ 10352782 (-) False AMCG00005850
TU194622 other upstream 2314040 10315380 ~ 10351719 (-) False AMCG00005850

Expression Profile