RNA id: AMCG00006420


Basic Information

Item Value
RNA id AMCG00006420
length 699
RNA type mRNA
GC content 0.56
exon number 1
gene id AMCG00006420
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 4133868 ~ 4134566 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCTTGTTTAACCAAGATCTGACCGTGTGCACCAGCATCTGGTACAATGCCTTGCTCTGCCTCTATTACTGCCTCAAGATCCTCCCTGCAAAGACAGGCTGCTTCAGGGTTATCAAGTCCCATCTCTCCTGCTTGGTGTGCTGGGCGTTGTTGATCATCTTCTTCCTCTGCTTCGGCATGTCTTGGAACTCGCTTTTGAAGGGCCACTGCCGGCCCCAAAACCTCACCAACGCCACAGAGCTGCTGTTGACGTATGACTGTACAGTCAAACAGGAGAATCTTATCTTTACAGTTGTGGGCTCCTTCCTGTTCTTGGCGCTGCCCCTCACAGTCATGACGGCCTCCTGCGTGGCCATCCTCCGCCACCTGCGGGCCCACATCCGCCGCATGAAGAGCGGCTGCAGTGAGTTCTCCTCGTCGCCACGTCTGGACAGCGAGCGGAGGGTGATGCGCTTGATGTCCTGCCAGGTGCTGCTGTACAGTGTCTCCCTCATCCTGTACATCATGTTGAGCTATTCCAGCAATGTTTTGCCACAGTTTCAGCTCTACGCCAACATCCCCCTGACCCTGTTCTGCTTGACCACGTCCGTCAACTTTCTGCTCCGCAATCCCAACCTGCGTCAGGGTGCCACCTACCTGGGCCGCCGGGCTCTCTGTCAGGATGCCCCCAATCAACTGGACGAAGACCCCGAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137159 lncRNA upstream 98560 3976728 ~ 4035308 (+) True G109541
TU137149 lncRNA upstream 189874 3943769 ~ 3943994 (+) True G109532
TU137147 lncRNA upstream 196966 3935980 ~ 3936902 (+) True G109530
TU137140 lncRNA upstream 222820 3909961 ~ 3911048 (+) True G109523
TU137110 lncRNA upstream 269136 3864485 ~ 3864732 (+) False AMCG00006393
TU137200 lncRNA downstream 21398 4155964 ~ 4156206 (+) True G109571
TU137201 lncRNA downstream 21876 4156442 ~ 4156969 (+) True G109572
TU137202 lncRNA downstream 23170 4157736 ~ 4159191 (+) True G109573
TU137205 lncRNA downstream 33518 4168084 ~ 4169106 (+) True G109575
TU137227 lncRNA downstream 95668 4230234 ~ 4230484 (+) True G109597
AMCG00006411 mRNA upstream 34150 4091688 ~ 4099718 (+) True AMCG00006411
AMCG00006403 mRNA upstream 51702 4079626 ~ 4082166 (+) True AMCG00006403
AMCG00006408 mRNA upstream 209348 3922421 ~ 3924520 (+) True AMCG00006408
AMCG00006409 mRNA upstream 211940 3921234 ~ 3921928 (+) True AMCG00006409
AMCG00006410 mRNA upstream 213086 3919904 ~ 3920782 (+) True AMCG00006410
AMCG00006412 mRNA downstream 13138 4147704 ~ 4151691 (+) True AMCG00006412
AMCG00006413 mRNA downstream 25636 4160202 ~ 4167952 (+) True AMCG00006413
AMCG00006423 mRNA downstream 44484 4179050 ~ 4185310 (+) True AMCG00006423
AMCG00006424 mRNA downstream 53027 4187593 ~ 4190086 (+) True AMCG00006424
AMCG00006432 mRNA downstream 119768 4254334 ~ 4266243 (+) True AMCG00006432
TU137156 other upstream 169872 3963597 ~ 3963996 (+) True G109538
TU137096 other upstream 270598 3859273 ~ 3863270 (+) True AMCG00006393
TU136960 other upstream 493207 3637743 ~ 3640661 (+) False AMCG00006387
TU136955 other upstream 534171 3599241 ~ 3599697 (+) False AMCG00006385
TU136948 other upstream 560159 3570039 ~ 3573709 (+) False AMCG00006379
TU137199 other downstream 18250 4152816 ~ 4155749 (+) True G109570
TU137203 other downstream 24957 4159523 ~ 4161973 (+) False AMCG00006413
TU137384 other downstream 342368 4476934 ~ 4477570 (+) True G109714
TU137394 other downstream 390240 4524806 ~ 4527738 (+) True AMCG00006445
TU137460 other downstream 890329 5024895 ~ 5025906 (+) True G109781