RNA id: AMCG00007189


Basic Information

Item Value
RNA id AMCG00007189
length 1440
RNA type mRNA
GC content 0.57
exon number 14
gene id AMCG00007189
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 6741697 ~ 6756583 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggaggagggaggcgggaggagaagaggagactCTCCCACAGCCACCGTATTCCTGGAGTTCTGGAAGAGGCGGAGGGCCGAACTGACCTACGACTGGGACCTCATCgactgggaggaggaggagGAGGAGCTCCGACCGCAGTTCGAGGCCAAGTACTCCAAGTTGGAGCGGGTGAACCCGATCTCGGGCAAACCGGAGCCCTTCCAGCCGTTCACCGACAAGCTGAGCCGCCTCATGGTCTCCGTCTCTGGGATATTCTTCATGTTCGCCTCCTTCCACTGGGACTTTGTGAAGAAGAACTGGCAGTTCGCCACCTCGGGCACTGGCGTCTGCATCAACTTCATGATCATCATGTCTCTCAACGTGGTCTATGAAAAGGTGGCTTACTTACTAACGAACCTAGAGCATCCACGGACCGAGTCGGTGTGGGAGAACAGCTTTGCTCTCAAGATGTTCCTGTTTCAGTTTGTGAACTTAAACAGCTCcatattttacattgctttctTCCTGGGAAGGTTTGCAGGGCGACCCGGAAAGTACAACAAGCTGTTTAACAGGTGGCGGTTAGAAGAGtGTCATCCGAGTGGCTGCCTGATTGACCTCTGTATGCAGATGGGCATCATCATGGTGCTAAAACAGATCTGGAACAATTTTATGGAGCTCGGTTACCCGCTGCTGCAGAACTGGTGGGCCCGCAGGAAGATAAAGATCGGGGGGCAGAATACGGAGGCCAAGGTCCCGCTGCCCCAGTGGGACAAGGACTGGAACCTGCAGCCCATGAATGCGCATGGCCTGATGGAAGAGTATCTCGAGATGGTGCTGCAGTTTGGCTTCACCACCATCTTCGTAGCGGCCTTCCCCCTGGCTCCCCTCCTGGCTCTGCTGAACAACATCATCGAGATCCGGCTGGACGCCTACAAGTTCGTGACGCAGTGGCGGAGGCCCATGCCAGCGCGCGCCACAGACATCGGGATCTGGTATGGGATCCTGGAGGCCATTGGCGTCCTCGCGGTCATCACCAACGCCTTCGTCATCGCCATCACCTCGGACTACATTCCTCGCTTCGTGTGTCTGAGAGGCTACATGAACAGCAGTCTGTCCGTGTTCGACATGGGGGTCCTGCAGAACGGGCAGACGGGGCACTGCAGGTACCGTGACTACAGAAACCCGCCCTGGGTCGACCCGCCCTACGACTTCACCCTGCAGTTCTGGCACGTGCTGGCGGCCCGGCTGGCCTTCATTATCGTCTTCGAGCACCTGGTGTTCGGGATCAAGTCCTTCATCGCCTACCTGATCCCCGACATGCCCAAGGACCTGTGCGACCGCATGCGCCGGGAGAAGTACCTGGTGCAGGAGATGATGTATGAGGCGGAGCTGGAGCACCTccagaaggagaggaagaagaacGGGAGGCGCTATCACCACGAATGGCCTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27327 lncRNA downstream 37035 6704409 ~ 6704662 (-) True G21807
TU27322 lncRNA downstream 52588 6687484 ~ 6689109 (-) True G21803
TU27301 lncRNA downstream 96819 6638997 ~ 6644878 (-) True G21787
TU27299 lncRNA downstream 103388 6635583 ~ 6638309 (-) True G21786
TU27300 lncRNA downstream 103638 6635583 ~ 6638059 (-) False G21786
TU27417 lncRNA upstream 567841 7324424 ~ 7327742 (-) True AMCG00007201
TU27647 lncRNA upstream 996831 7753414 ~ 7753697 (-) True G22057
TU27672 lncRNA upstream 1144219 7900802 ~ 7901175 (-) True G22077
TU27714 lncRNA upstream 1157021 7913604 ~ 7984510 (-) False G22111
TU27713 lncRNA upstream 1224765 7981348 ~ 7984510 (-) True G22111
AMCG00007188 mRNA downstream 51497 6689580 ~ 6690200 (-) True AMCG00007188
AMCG00007184 mRNA downstream 64716 6675666 ~ 6676981 (-) True AMCG00007184
AMCG00007185 mRNA downstream 81435 6655413 ~ 6660262 (-) True AMCG00007185
AMCG00007177 mRNA downstream 369299 6357010 ~ 6372398 (-) True AMCG00007177
AMCG00007176 mRNA downstream 619321 6121702 ~ 6122376 (-) True AMCG00007176
AMCG00007190 mRNA upstream 7641 6764224 ~ 6778550 (-) True AMCG00007190
AMCG00007191 mRNA upstream 171017 6927600 ~ 6943044 (-) True AMCG00007191
AMCG00007192 mRNA upstream 205147 6961730 ~ 6967694 (-) True AMCG00007192
AMCG00007193 mRNA upstream 223368 6979951 ~ 6987935 (-) True AMCG00007193
AMCG00007197 mRNA upstream 465768 7222351 ~ 7245987 (-) True AMCG00007197
TU27173 other downstream 727528 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 921413 5816809 ~ 5820284 (-) True G21632
TU26789 other downstream 1684291 5056787 ~ 5057406 (-) True G21429
TU26778 other downstream 1692177 5042520 ~ 5049520 (-) False G21426
TU26783 other downstream 1692858 5041659 ~ 5048839 (-) True G21426
TU27501 other upstream 742864 7499447 ~ 7506875 (-) True G21942
TU27830 other upstream 1636613 8393196 ~ 8396224 (-) True G22200
TU28289 other upstream 3430731 10187314 ~ 10190204 (-) False AMCG00007289
TU28633 other upstream 6594934 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 7189060 13945643 ~ 13946065 (-) True G22931

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00048090 True 5648 mRNA 0.48 26 NC_007136.7 35375848 ~ 35468555 (+)