RNA id: TU29891


Basic Information

Item Value
RNA id TU29891
length 233
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G23875
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18901365 ~ 18901597 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCACCTTTTTCCACGCTTCACTGAATCTTTAAATGAACACAGCCATAGAAATGATTTTGCCATTAGTGTTGCAGACTACCGATTGACCTTGTGTGGCCAGAGTTCACAGGGTTAGGCATGTAGTCATGGTAGCTCTCACTTTGTATTGACCTCGactgtaaatacatatgtaaaaaacaaaacaaaacctcctTCACAGCCAAGCGTCGACAAGAACTGGAATCCTGCACTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29883 lncRNA downstream 33886 18866767 ~ 18867479 (-) True G23867
TU29867 lncRNA downstream 71278 18829865 ~ 18830087 (-) True G23854
TU29851 lncRNA downstream 116228 18781214 ~ 18785137 (-) True G23843
TU29850 lncRNA downstream 120273 18780837 ~ 18781092 (-) True G23842
TU29848 lncRNA downstream 121757 18779171 ~ 18779608 (-) True G23840
TU30035 lncRNA upstream 578417 19480014 ~ 19481087 (-) True G23982
TU30064 lncRNA upstream 678184 19579781 ~ 19579984 (-) True G24003
TU30182 lncRNA upstream 890104 19791701 ~ 19797576 (-) True AMCG00007481
TU30194 lncRNA upstream 966261 19867858 ~ 19912916 (-) True G24102
TU30293 lncRNA upstream 1309422 20211019 ~ 20222004 (-) False AMCG00007494
AMCG00007448 mRNA downstream 77759 18815851 ~ 18823606 (-) True AMCG00007448
AMCG00007449 mRNA downstream 90794 18791578 ~ 18810571 (-) True AMCG00007449
AMCG00007445 mRNA downstream 168346 18714615 ~ 18733019 (-) True AMCG00007445
AMCG00007442 mRNA downstream 267396 18624723 ~ 18633969 (-) True AMCG00007442
AMCG00007441 mRNA downstream 287419 18597275 ~ 18613946 (-) True AMCG00007441
AMCG00007457 mRNA upstream 119123 19020720 ~ 19023092 (-) True AMCG00007457
AMCG00007455 mRNA upstream 122301 19023898 ~ 19025640 (-) True AMCG00007455
AMCG00007454 mRNA upstream 148475 19050072 ~ 19056271 (-) True AMCG00007454
AMCG00007456 mRNA upstream 156660 19058257 ~ 19074146 (-) True AMCG00007456
AMCG00007462 mRNA upstream 185605 19087202 ~ 19101380 (-) True AMCG00007462
TU29846 other downstream 123727 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 842416 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 2279460 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 2578714 16320997 ~ 16322651 (-) False AMCG00007365
TU30203 other upstream 1013549 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 1429916 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 1569514 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 5070074 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 5364227 24265824 ~ 24267921 (-) False AMCG00007637

Expression Profile