RNA id: AMCG00007462


Basic Information

Item Value
RNA id AMCG00007462
length 2400
RNA type mRNA
GC content 0.52
exon number 13
gene id AMCG00007462
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19087202 ~ 19101380 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTCATTGATGGGCTACCGAAATGTACAACTGATAAGTGTGTATTGATGCTCGGGCCGGGCAGACGCGATCGATGCATTTATCTCAGTTCATTCCCGTGATCTCCCCGAGTGGCGACATCTCGCTGTCCCCTCGTCCTTGCAAATAACCAAGTTGTATACATCGTAAATGGAACAAGGAATGGGAATTCGTTGtttctccccacccccccacttgAACGGGAATTACGTAATACTTTGAAAGATACCCAAACCGGTGTTCATAACtgtgattgtttttcattgcattaTTACTATGCAAAAGTTGCAACCGAATACGACTACAAAACCACCTAAGGGTAAGGGGACTCTGAGAGGCGTTTTCAAAGGCTAcgattaaatgcattttgtatgaCTTATTATTTGTCGTGCTAAAGACAAAAGGCAAGTGTCTAGTGGCAATAGCAACACAGCGCAGCCCAGCCTTTCTCGGAggagtttgtttgtgttgaaaggcatggggagggggaggagcaGGTTGACGTCTGCGCCTGCGCGGCTCGGCGGCTCATCCGGGTCTCTGCCATCGAGAGTGTCGGTGCTGCGGGTCGGTAAGGAGGCGGGAAATGGCGACTGGAGGAGCAGCGCAGAAACGGAGAGACTGTCCCTAAACACAGCGAGCCACAAGCGGCCAGAGGCAGCGCCAGTCCCCGCGGCGGCGAGTAGGAGCCAGGCAAAGACAACCAGCTCGGCGACGCGATACTCCGGCCCCTTGGCAGtTTTACATGTGACCATTAAGAAGATGAGGCTGAGAATGCGCAAGGCATCTCAGCAGTCGAACCCTGCGCACACGCCGCGGCCGTCCCGGTCCAAAAGGAAACACTCGGAGGTGGAGGAGTGCTCGCCGGTTGGGGCTGGGAAACCACAGAAGACTGAGACAACTGGCCTGCTCTCATCAATCAAGAAATTCATCCGAGGAAATGCCGCCAAGGTGGAGCAGGAGAACCCTGCGAAGAGGAGCCGGATCGACTGCGACTTGGACAATAACTTGATATCCTCCACGCCGCAGGCTGGAGACCTGGCTGACAAGCCCCTCTCCCGTGTCCGGCGGAAAAGCCCTGTGAATGGGGATGCTACAATTCACAACACAACCAAGCCTGTGAAGCCCAATGGGAAGCTAGAGGAGCCGCCGGATGTTGTGGGAAGCCCTCCGCGGACCACTCTGCTGGGGACCATATTCTCTCCTGTCTTCAACTTCTTCTCACCAgcaaataaaaatgGCACGTCGGGGTCAGACTCTCCCGGGCAAGCGGTGGAGGCCGAGGAGATCGTCAAGCAGCTGGATATGGAACAAGTGGAGGAGATGCCCACCAGCACGGCCACATCCACCGAGGGCATGCTGTACCCCAGTCCCCCCCTGCCCCTGCGCCCCACCACCGACAGCGCCTCCGAGGAGGGGGAGATCGTGTCTGATGGGGACCTTCCCCCTCTCACAGCCCCAGGGTCGACCCCAGATAGTGGCTACTCTGAGGCTCCTACGGCTCCCTCTGAAGGGACGTATGAGGAGGACTGGGAGGTGTTTGACCCGTACTATTTCATCAAACATGTCCCGCCACTGACGGAGGAGCAGCTAAATCGCAAACCAGCTCTCCCCCTGAAGACCAGAAGCACACCCGAGTTCTCCTTGGTCCTGGACCTGGATGAAACATTGGTACATTGTAGCTTGAATGAGCTGGAAGATGCTGCCCTTACCTTCCCTGTCCTTTTTCAAGATGTAATATACCAGGTGTATGTACGGTTGAGGCCGTTCTTCAGAGAGTTCCTTGAGCGAATGTCCCAGATCTACGAGATCATTCTCTTCACTGCCTCCAAGAAGGTGTACGCAGATAAACTGCTCAACATCCTGGACCCGAAGAAGCAGTTGGTTAGGCACCGACTTTTTCGTGAACATTGTGTTTGCGTACAAGGAAACTATATCAAGGATTTAAACATCCTTGGGAGGGATCTGTCCAAAACCATTATAATTGACAACTCGCCACAGGCCTTTGCATACCAGCTTTCCAATGGGATTCCTATAGAAAGCTGGTTCATGGATAAGAATGACAACGAGCTGCTGAAATTGGTCCCTTTCCTGGAGAAGCTTGTCGAACTGAACGAGGACGTGAGACCTCATATCCGGGAGCGGTTTCGCCTGCACGACTTGCTGCCCCCAGACTGAAGCCCCGGGCAGGGAGGGCAGGCATGGCCTAAACAAATGGAGAGGAAACAACGGAAGTAAAgcgaaaaacaaaccaaccaaccagAAAAGACACGCAGAACCCTTTTGGATTACAACTAAAAAGTGTTGCCATTACTGttgaatttttaaatttaattttaaccccacattttgcttttaaggttttttttttttttttttttt

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K17616 CTDSPL2; CTD small phosphatase-like protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29891 lncRNA downstream 185605 18901365 ~ 18901597 (-) True G23875
TU29883 lncRNA downstream 219723 18866767 ~ 18867479 (-) True G23867
TU29867 lncRNA downstream 257115 18829865 ~ 18830087 (-) True G23854
TU29851 lncRNA downstream 302065 18781214 ~ 18785137 (-) True G23843
TU29850 lncRNA downstream 306110 18780837 ~ 18781092 (-) True G23842
TU30035 lncRNA upstream 378634 19480014 ~ 19481087 (-) True G23982
TU30064 lncRNA upstream 478401 19579781 ~ 19579984 (-) True G24003
TU30182 lncRNA upstream 690321 19791701 ~ 19797576 (-) True AMCG00007481
TU30194 lncRNA upstream 766478 19867858 ~ 19912916 (-) True G24102
TU30293 lncRNA upstream 1109639 20211019 ~ 20222004 (-) False AMCG00007494
AMCG00007456 mRNA downstream 13056 19058257 ~ 19074146 (-) True AMCG00007456
AMCG00007454 mRNA downstream 30931 19050072 ~ 19056271 (-) True AMCG00007454
AMCG00007455 mRNA downstream 61562 19023898 ~ 19025640 (-) True AMCG00007455
AMCG00007457 mRNA downstream 64110 19020720 ~ 19023092 (-) True AMCG00007457
AMCG00007448 mRNA downstream 263596 18815851 ~ 18823606 (-) True AMCG00007448
AMCG00007461 mRNA upstream 7604 19108984 ~ 19127020 (-) True AMCG00007461
AMCG00007463 mRNA upstream 36460 19137840 ~ 19140452 (-) True AMCG00007463
AMCG00007460 mRNA upstream 67434 19168814 ~ 19179046 (-) True AMCG00007460
AMCG00007459 mRNA upstream 81219 19182599 ~ 19187092 (-) True AMCG00007459
AMCG00007470 mRNA upstream 381232 19482612 ~ 19512979 (-) True AMCG00007470
TU29846 other downstream 309564 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 1028253 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 2465297 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 2764551 16320997 ~ 16322651 (-) False AMCG00007365
TU30203 other upstream 813766 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 1230133 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 1369731 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 4870291 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 5164444 24265824 ~ 24267921 (-) False AMCG00007637

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066182 True 6386 mRNA 0.37 12 NC_007118.7 31379528 ~ 31395511 (+)
grasscarp (Ctenopharyngodon idella) CI01000026_05793556_05805041.mRNA True 1436 mRNA 0.50 11 CI01000026 5793556 ~ 5805125 (+)