RNA id: TU63090



Basic Information


Item Value
RNA id TU63090
length 566
RNA type TUCP
GC content 0.41
exon number 3
gene id G50448
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 6957611 ~ 7018125 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aggGGGAACAACAGTTGGATTTGCCTCTTACACTGGTTTGGAATCTGTGTTAAGTGCAAAATTCCTTCAGAACTCTCAAAACAATGCATCTCCCCGAATGAACTCACAGATAGTAACTGTGGTCATCGGCCAAAAGAAGAATCAGAACCTTTCTCAGCCTATTCATATAACTTTCAAGCACAATCAAATCAAAGGTGAAAGAGAAACTGTTCAGTGTGTCTACTGGAATCATCAAGGAAATGACAGCTCCTGGTCCACAGAGGGCTGCAAAGAAGTTCATTccaatacaacacacactgtcTGCAGCCTTACCCACCTCAGCAGCTTTGCTTTAATCATGGCAACTGATGAATCACAGATCGAAGATGATTCCACTCTGGAAATGATCACCTACATATTTTTGAGCATAGCCCTCATTTGTCTCTGCCTTGCAAtccttacatttgtattgtgtgtttcaGTCCATAAAGGAAATACTGCCCTTCACTTGCATTTGAGCCTTTGTCTTTTTATGGCGAACCTTCTCTTTTTAGTTGGAGTTGGAGtatctaaaacagaaaacaagg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU62986 lncRNA upstream 306272 6646950 ~ 6651339 (+) True G50367
TU62981 lncRNA upstream 327965 6629438 ~ 6629646 (+) True G50362
TU62960 lncRNA upstream 439020 6490657 ~ 6518591 (+) True G50346
TU62955 lncRNA upstream 582577 6374665 ~ 6375034 (+) True G50342
TU62953 lncRNA upstream 584700 6372432 ~ 6372911 (+) True G50340
TU63093 lncRNA downstream 4336 7022461 ~ 7166940 (+) True G50450
TU63094 lncRNA downstream 22796 7040921 ~ 7050362 (+) True G50451
TU63101 lncRNA downstream 194621 7212746 ~ 7219181 (+) False G50458
TU63102 lncRNA downstream 194621 7212746 ~ 7219181 (+) True G50458
TU63103 lncRNA downstream 202615 7220740 ~ 7222856 (+) True G50459
AMCG00008629 mRNA upstream 208726 6747711 ~ 6748885 (+) True AMCG00008629
AMCG00008626 mRNA upstream 238520 6692745 ~ 6719091 (+) True AMCG00008626
AMCG00008619 mRNA upstream 594581 6305726 ~ 6363030 (+) True AMCG00008619
AMCG00008618 mRNA upstream 749860 6188494 ~ 6207751 (+) True AMCG00008618
AMCG00008617 mRNA upstream 838259 6108963 ~ 6119352 (+) True AMCG00008617
AMCG00008639 mRNA downstream 293611 7311736 ~ 7315850 (+) False AMCG00008639
AMCG00008641 mRNA downstream 336140 7354265 ~ 7354886 (+) True AMCG00008641
AMCG00008640 mRNA downstream 353903 7372028 ~ 7376143 (+) True AMCG00008640
AMCG00008645 mRNA downstream 397674 7415799 ~ 7416230 (+) True AMCG00008645
AMCG00008643 mRNA downstream 469045 7487170 ~ 7496005 (+) True AMCG00008643
TU62843 other upstream 1214861 5738541 ~ 5742750 (+) True G50243
TU62810 other upstream 1360812 5596023 ~ 5596799 (+) True G50215
TU62655 other upstream 2384877 4561991 ~ 4572734 (+) True AMCG00008580
TU62530 other upstream 2792128 4162058 ~ 4165483 (+) True G49982
TU62528 other upstream 2797549 4156088 ~ 4160062 (+) True G49980
TU63267 other downstream 915704 7933829 ~ 7939771 (+) True G50583
TU63268 other downstream 915704 7933829 ~ 7939771 (+) False G50583
TU63407 other downstream 1295300 8313425 ~ 8317602 (+) True AMCG00008664
TU63473 other downstream 1432041 8450166 ~ 8666548 (+) True G50747
TU63666 other downstream 2063702 9081827 ~ 9087967 (+) True G50900

Expression Profile