RNA id: AMCG00008643


Basic Information

Item Value
RNA id AMCG00008643
length 965
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00008643
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 7487170 ~ 7496005 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctgaGCCTTTGGTCCAAGTGGATGGGAAGCCCAGCTGTTGCTTCTTCAAGTTCAGCCCCAAGATCATGTTCACCAAGGTGCTGAAGGCGCAGTTGTGGGTCTACCTGCGCCCGCTCCAGCAGACATCCACTGTCTACCTGCAGATTCTGCGCCTCAAACCTGTCACTGAAGAGGGCAGCCGCCACATACGCATCCGTTCTCTCAAGATTGAGCTCAACTCGCGCTCGGGCCACTGGCAGAGCATTGACTTCAAGCATGTTCTGCAGAACTGGTTCAAGCAGCCCCACACCAACTGGGGCATCGACATCAATGCTTTCGATGAGAGTGGTAATGACCTTGCTGTCACCTCGCTGCGGCCTGGGGAAGAGGGACTGagagagatagaaaatgttttcaaaagagGAGCAATAGTGCCATTTAATGGAATGATTTCAACTCTAGAGTATTTTTTAACACGCGTATACCTACACAATCACAAACGCTGTTCACCCCCTGAGTTTTTCTTTGTCCTGATGAGAGACTCGGAATTTCAAGTAAATAATGCGCCTGGGCAATTCAAACATGGTTGTTTTGTCATGTTTCCCCAGCAACCCTTCCTGGAAGTGAAGGTCCTGGAGACATCGAAACGCTCCCGGAGGAACCTGGGCCTGGACTGCGATGAACACTCCACCGAGTCGCGCTGCTGCCGTTACCCGTTGACTGTGGACTTCGAGGCTTTCGGCTGGGACTGGATCATCGCCCCTAAAAGATACAAAGCCAACTACTGCTCAGGCCAGTGCGAGTACATGTTCATGCAGAAGTTCCCCCATACCCACCTGGTTCAGCATGCAAACCCCCGAGGCTCCGCTGGCCCCTGCTGCACCCCGACTAAGATGTCCCCCATCAACATGCTCTACTTCAATGACAAGCAGCAGATCATCCATGGAAAGATCCCTGGGATGGTGGTGGACCGCTGTGGTTGTTCC

Function

GO:

id name namespace
GO:0040007 growth biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63177 lncRNA upstream 107664 7379048 ~ 7379506 (+) True G50506
TU63121 lncRNA upstream 171349 7296886 ~ 7315821 (+) True AMCG00008639
TU63122 lncRNA upstream 171349 7296886 ~ 7315821 (+) False AMCG00008639
TU63128 lncRNA upstream 171349 7296886 ~ 7315821 (+) False AMCG00008639
TU63108 lncRNA upstream 239128 7234764 ~ 7248042 (+) False G50461
TU63206 lncRNA downstream 36969 7532974 ~ 7542850 (+) True G50534
TU63219 lncRNA downstream 178136 7674141 ~ 7676185 (+) True G50546
TU63235 lncRNA downstream 196931 7692936 ~ 7828902 (+) True G50561
TU63237 lncRNA downstream 243190 7739195 ~ 7740429 (+) True G50563
TU63252 lncRNA downstream 328878 7824883 ~ 7826540 (+) True G50571
AMCG00008645 mRNA upstream 70940 7415799 ~ 7416230 (+) True AMCG00008645
AMCG00008640 mRNA upstream 111027 7372028 ~ 7376143 (+) True AMCG00008640
AMCG00008641 mRNA upstream 132284 7354265 ~ 7354886 (+) True AMCG00008641
AMCG00008639 mRNA upstream 171320 7311736 ~ 7315850 (+) False AMCG00008639
AMCG00008629 mRNA upstream 738285 6747711 ~ 6748885 (+) True AMCG00008629
AMCG00008644 mRNA downstream 47715 7543720 ~ 7552782 (+) True AMCG00008644
AMCG00008648 mRNA downstream 126625 7622630 ~ 7669344 (+) True AMCG00008648
AMCG00008649 mRNA downstream 226236 7722241 ~ 7725184 (+) True AMCG00008649
AMCG00008651 mRNA downstream 287603 7783608 ~ 7819242 (+) True AMCG00008651
AMCG00008652 mRNA downstream 505591 8001596 ~ 8016744 (+) True AMCG00008652
TU63090 other upstream 469045 6957611 ~ 7018125 (+) True G50448
TU62843 other upstream 1744420 5738541 ~ 5742750 (+) True G50243
TU62810 other upstream 1890371 5596023 ~ 5596799 (+) True G50215
TU62655 other upstream 2914436 4561991 ~ 4572734 (+) True AMCG00008580
TU62530 other upstream 3321687 4162058 ~ 4165483 (+) True G49982
TU63267 other downstream 437824 7933829 ~ 7939771 (+) True G50583
TU63268 other downstream 437824 7933829 ~ 7939771 (+) False G50583
TU63407 other downstream 817420 8313425 ~ 8317602 (+) True AMCG00008664
TU63473 other downstream 954161 8450166 ~ 8666548 (+) True G50747
TU63666 other downstream 1585822 9081827 ~ 9087967 (+) True G50900

Expression Profile