RNA id: AMCG00008645


Basic Information

Item Value
RNA id AMCG00008645
length 432
RNA type mRNA
GC content 0.58
exon number 1
gene id AMCG00008645
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 7415799 ~ 7416230 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTACTTATTGTGCTGGGACTGTCGGGCAGTGATGAACCCACCATCATCCTGCAGCCAGTGAGTGAGGTGCCCACGGAAGCCGGGGTTTTGTTGGCAGAAGCGGAGGAGCCGGGCGCTCAGGAGTGCACGGCATGTGTCTGGAGAGAGCACAGCAAGGTCCTCCGACTGGAGACCATCAAGTCCCAGATCCTTAGCAAACTGCGGCTCAAGCAGGCGCCTAATATAAGCCGGGAGGTGGTGAACCAGCTGCTGCCCAAGGCTCCCCCGCTGCAGCAGCTCCTCGATCACCACGACTTCCAAGGGGACGCTTCCTTACAGGACGAGTTCATGGAGGAGGACGAGTATCACGCCACCACCGAGTCTGTCATCACGATGGCTTCGGAGCGTGAGTACATATTGCTGAAAGAGAAAGTGTACTGGCGCAGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63177 lncRNA upstream 36293 7379048 ~ 7379506 (+) True G50506
TU63121 lncRNA upstream 99978 7296886 ~ 7315821 (+) True AMCG00008639
TU63122 lncRNA upstream 99978 7296886 ~ 7315821 (+) False AMCG00008639
TU63128 lncRNA upstream 99978 7296886 ~ 7315821 (+) False AMCG00008639
TU63108 lncRNA upstream 167757 7234764 ~ 7248042 (+) False G50461
TU63206 lncRNA downstream 116744 7532974 ~ 7542850 (+) True G50534
TU63219 lncRNA downstream 257911 7674141 ~ 7676185 (+) True G50546
TU63235 lncRNA downstream 276706 7692936 ~ 7828902 (+) True G50561
TU63237 lncRNA downstream 322965 7739195 ~ 7740429 (+) True G50563
TU63252 lncRNA downstream 408653 7824883 ~ 7826540 (+) True G50571
AMCG00008640 mRNA upstream 39656 7372028 ~ 7376143 (+) True AMCG00008640
AMCG00008641 mRNA upstream 60913 7354265 ~ 7354886 (+) True AMCG00008641
AMCG00008639 mRNA upstream 99949 7311736 ~ 7315850 (+) False AMCG00008639
AMCG00008629 mRNA upstream 666914 6747711 ~ 6748885 (+) True AMCG00008629
AMCG00008626 mRNA upstream 696708 6692745 ~ 6719091 (+) True AMCG00008626
AMCG00008643 mRNA downstream 70940 7487170 ~ 7496005 (+) True AMCG00008643
AMCG00008644 mRNA downstream 127490 7543720 ~ 7552782 (+) True AMCG00008644
AMCG00008648 mRNA downstream 206400 7622630 ~ 7669344 (+) True AMCG00008648
AMCG00008649 mRNA downstream 306011 7722241 ~ 7725184 (+) True AMCG00008649
AMCG00008651 mRNA downstream 367378 7783608 ~ 7819242 (+) True AMCG00008651
TU63090 other upstream 397674 6957611 ~ 7018125 (+) True G50448
TU62843 other upstream 1673049 5738541 ~ 5742750 (+) True G50243
TU62810 other upstream 1819000 5596023 ~ 5596799 (+) True G50215
TU62655 other upstream 2843065 4561991 ~ 4572734 (+) True AMCG00008580
TU62530 other upstream 3250316 4162058 ~ 4165483 (+) True G49982
TU63267 other downstream 517599 7933829 ~ 7939771 (+) True G50583
TU63268 other downstream 517599 7933829 ~ 7939771 (+) False G50583
TU63407 other downstream 897195 8313425 ~ 8317602 (+) True AMCG00008664
TU63473 other downstream 1033936 8450166 ~ 8666548 (+) True G50747
TU63666 other downstream 1665597 9081827 ~ 9087967 (+) True G50900

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000207_00392356_00468497.mRNA True 1170 mRNA 0.50 3 CI01000207 392356 ~ 468497 (+)