RNA id: AMCG00008644


Basic Information

Item Value
RNA id AMCG00008644
length 4305
RNA type mRNA
GC content 0.42
exon number 8
gene id AMCG00008644
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 7543720 ~ 7552782 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAAAAGCGTGGCGTTGAAACAATGAGCCACACtagtgatgtttgtttgttgtgttttacgTGTATCAGTGGAATATCGGTCAAATAATGCCGATCAATGTGATAGTAGAGGACTCCGTTAACTAGTTTTTAGAGAATCTGATATTTTATTGGAGATGTTAAGATGGCTGACGTGCTGATAAGAATGAGGCGGGATGCTGCGCAACGAAGGGCATGGAGAGAAGggagtttaaaatgaaaggcgGCTCTCCGGAGTAATACAAAGGAGTAATACAAACCAGTTCAAGTGATGTTGTTTTGTACAATTGTCCGTCCATTTTATAACACAGTTGGGTTAAGTCCCCTCCAGTAAGCCTGAGGCGTGAAGAATAAAGCGGGGATGAAACGAGCGAGTCGCTGGTCTGCCTGAGACTGTTCAGTGGGGGTGCACGACCCCCCAGCCTCCAACAAATAGTAGCATAAACTTCAAATACATACTATTTAAAAGGTTTCTGTGAGACCCGAGATAGCCTTATTTTGATGATGCCATCCCATTGTTTCATAGAAAACAGCGTGAAAAGTTGGAAAAACACGTGCATTTGAAATTTGATCAAGTGcatagaaaataacaaatcGAACCAATATATTTGATTCAGCATAATTTTATATCACTAATTACATACTGCTTCTCAAgtaacattttcacattgatCACATTGAGTGTAACTGATCTACcagaaatatgaatacaaaaatataaatataggtatCAAAAGTgcctaatataaaataattgtaaaataaatacaaagacaagCCCTATCAAACTTATTTTTGATTAAGTAAGTATATTGATGAGTATTTGACCATTAATTCCATAGAACAATCTTCCAAGCCTGTCATAGTCCTGATGCATGTTGGGaaatttacacaaaatatgtgGTTTACCAGACCAAAGAAAAAGATGCCAAAACCAAGACATTCTCACACGCTGATGATCTGAATGGGAGATTACTATGTCTGACATAGCAGTCCTTGTTCCTGCTGTTACACGGTCTCGTTGTCTTTCTCAGGTCTGGGCATGAACAGAATCCGGATCCATGTGTTACCATCAAGCAGAGGCCGTGCTGCACCTACAGCCCGAGCCCAGGAGCCCCAGACTTGCTCCTATGCCCGGAGACCCTGTTCCCAGCCTCGCCTGGAGGGCCTGGAGTTCTGCATCAAACATGTGCTGGATGACAAGAATGCTCCTTACAGACAGTGCAGCTATGTCTCCAATAAAAATACCAAGCGCTGCCCCAATGCAGCCCCCAAGCCTGAGAAGAAAGATGGAGTTTCGTTCTGTGCTGAGCACGCTCGTAGGAATTCACTGGCTCTCCAGGCTCAGCTCAGAAAGGCCTCGTCTGGCCCCTCACCTGAGATTCTGCTCTCTCAGCTCAGCGGATACAGCAAACCAGAGCCGGGGCCTCCTGGCCAGGACTGCGGCCGTAGCGAAGCCAATCGTATACTGGATGAAGACAGCTGGAGTGAGGAGGAACAAGAGCCAGCTGTAGTGGATCAGACCTGGAGAGGAGACCCTGACAGTGAGGCTGACAGCATTGACAGTGACCATGAGGACCCCCTGAAACATGCAGGAGTGTATACGGCGGAGGAGGTGGCTTTGATCACCCGAGAAAAGCTGATCCGGCTGCAGTCCCTTTACATCGACCAGTTCAAACGTCTGCAACACCTTCTCAAAGAGAAGAAACGCAGATACCTGCACAGTCGCAAAGTTGAACATGAGAACATAGGGAGCAGCCTGCTGACCGGTCCTGAGGGGCTTTCGATGAAGGAGAGGGAGAATTTGAAGAAGCTGAAAGCGCTGCGGCGTTATCGCAGGCGCTATGGAGTGGAGGCCCTGCTACACCGACAGCTCAGGGAGCGTAGGCTGGCAGCTACAGAAGGGGCTGcccaacaaGATGTGCCCTGTGACCGGCCTGTGCACATGGGTCAGTCAGAAGAGCCTCGGTGCCCACTGCATTTGTCTCTGCCACCACCCATGTACCAACCCGAGCAGGAGGCCCTTGTTCCCGAGCAGCTGGCGCCTGTGCCCATGGACCTGTACCTGAGCGCTGCCGAGCTGCAGCCCACAGAGAACCTGCCTCTGGAGTTCAGTGACGATTTAGACGTGGTGGGGGATGGGCTGCAGTgtcccccctctcccctgctCTTTGACACGGCCCTAGCGCTGGAGGACCAGTCTATCCGGGAGATTGCAGAAGCGCCGATGGACATTCTGACTGGGGAGGAGCAGCCGGGTCTGGAGGCTGCAGGGCACAACTCAGCGTCCCATCCTTCAGAGCTGGACCTCTCGGACAGGCACACACAGCCTATGGAGGGCCAGggtGTTTCATTGGGAATCAGTGGAGGTGAAGTGATGCAAGGAATGTCTTCAAATTTCAACACAATGCCTACAGATGCAACCTGACCAGCACAGAGTAGCCatactaaatataaaaaatacacatctaATATCAACACTGGTACCTTGTTAAGCTATTTGACAATTAGTAGGTGACATTTGTCACTGGAAATGCTTATCTATCATTTAATTCTGGGTCTTGTTGCAAGCAAAACCGCATTGTTCCATGACTTAATTGCACTGCGGTGGAACAGAGTAGTTGTACTTTGAGTACTGTAGTGTCCATGTGCTCCAAAACTTGCTggtgtaaaatatgtaaattccAGACTCTAAATCGgctattttaatacattactaAAAGTATCTGTTGGCACCTCTTCAAAGGTTACTTGGGTTGCGGTGGATAATGTTCACTTGCCTTTGTGCATTTGATCCTGCTATGGTGTTCAATTTGTAATAGATTAAATGGACATTTAATggtgaagaaataaaacaacttgtGAGTTTCAAAATCTTTAATTCTGTACAGTTTTGTATTGGAACATCTACATTCTTATTTAAGcttacacttctgttttttggtAACTTTTAATTCAAGACCAAAATCAGTGCCTCTTTGCAACTTGTATTGCCTCTTAGTGTTCCCACCCTATCAAAATTAGTTTTTGAGCAATACCATCCAATATTGAATTGGTTACTTCACTTCGAATGAGTATGTTCTGCTTTGAATGTACAATTTGATTCCATAGTATAAAACTAAAATTCACTTAATAAGCTTTCAATAACCTGCTATTCAATTTTTTGGATTTGTATGTGAATGGGAAATTCtttttactatatttatttaattataatatttactgTCACTAGTTTCTGAACCTTTGTAAACTGTGTGGTACAGTCTTTGTccaaatgaatgtgaaatgcattttatggaACTGTGTAATACATTTGACAGTATGGCTTTACCATTTAAACTGTAGCACATTAGCCATGGGGGTTCTTGGAGGGAAAAACTATTTCCttccaatgtattttttaagaaaaatacattatcaaagAGAAGATCTGGTATGTTTGTCATTTGCAGGAGTCTATAGGATACGCTATAACTCAGTTTCCTGTAGCCAATGTTACCTTCAAATGTCTTGGTGCCACAAAGGGAGTGCAACGTATCAGCCACTACTACCACTAAAGGAAATGTGGTGGAGCTCTGACTACATGGATTATTAACAAGAAAAACTAGGGGAATAGATGTAGAATATTGCTAGTGCCTTGTGTTTATCTTGACTGGGGTTTGTAacctgtatttcagtcctccaGCACCAAGAGGCTGATATAGGCTCCTCTGAAAGCCACTTATTCCCATTGCAATATCctaatttcaattatttatcatttattactTAATACATACATCAGAGCAATGCACAGGGCTACAGATGCCCTTTAATCATGTCAggtttttttgtattctatgcattaattaaatgatCCCCAGaaagatgtatataatttgtcaacagaagtgtttctcttttttaaagatgaaatacttatttaatggAATGATATTCTGTGAAAATGTGCCCATATGCAGAAGCCATCCATGGAAATGGTAAAAATTGATGCGCATGTATTATCTGTCTACCATCTTCTGCCTTGGGAAACATCTTGGGCattaatcaaaaatgtattaaaaaacattcaatttttttttcatttgcatgtaGTAGGCATTGGTCAATTTTGGATTTACTGTCAGCATTAAACCCTGGAATAGAATCTAGGGAAAATCCTTATTGAAAAGTTGTGAGCTggatgaatatttattttgcatttatccccattgtattttgtattcactatATACTTTGACCgcatcaaaaataaattggtgcatttaaagcttttattataaaaaa

Function

GO: NA

KEGG:

id description
K18401 KANSL2; KAT8 regulatory NSL complex subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63206 lncRNA upstream 870 7532974 ~ 7542850 (+) True G50534
TU63177 lncRNA upstream 164214 7379048 ~ 7379506 (+) True G50506
TU63121 lncRNA upstream 227899 7296886 ~ 7315821 (+) True AMCG00008639
TU63122 lncRNA upstream 227899 7296886 ~ 7315821 (+) False AMCG00008639
TU63128 lncRNA upstream 227899 7296886 ~ 7315821 (+) False AMCG00008639
TU63219 lncRNA downstream 121359 7674141 ~ 7676185 (+) True G50546
TU63235 lncRNA downstream 140154 7692936 ~ 7828902 (+) True G50561
TU63237 lncRNA downstream 186413 7739195 ~ 7740429 (+) True G50563
TU63252 lncRNA downstream 272101 7824883 ~ 7826540 (+) True G50571
TU63261 lncRNA downstream 344071 7896853 ~ 7900191 (+) True G50579
AMCG00008643 mRNA upstream 47715 7487170 ~ 7496005 (+) True AMCG00008643
AMCG00008645 mRNA upstream 127490 7415799 ~ 7416230 (+) True AMCG00008645
AMCG00008640 mRNA upstream 167577 7372028 ~ 7376143 (+) True AMCG00008640
AMCG00008641 mRNA upstream 188834 7354265 ~ 7354886 (+) True AMCG00008641
AMCG00008639 mRNA upstream 227870 7311736 ~ 7315850 (+) False AMCG00008639
AMCG00008648 mRNA downstream 69848 7622630 ~ 7669344 (+) True AMCG00008648
AMCG00008649 mRNA downstream 169459 7722241 ~ 7725184 (+) True AMCG00008649
AMCG00008651 mRNA downstream 230826 7783608 ~ 7819242 (+) True AMCG00008651
AMCG00008652 mRNA downstream 448814 8001596 ~ 8016744 (+) True AMCG00008652
AMCG00008653 mRNA downstream 468886 8021668 ~ 8036234 (+) True AMCG00008653
TU63090 other upstream 525595 6957611 ~ 7018125 (+) True G50448
TU62843 other upstream 1800970 5738541 ~ 5742750 (+) True G50243
TU62810 other upstream 1946921 5596023 ~ 5596799 (+) True G50215
TU62655 other upstream 2970986 4561991 ~ 4572734 (+) True AMCG00008580
TU62530 other upstream 3378237 4162058 ~ 4165483 (+) True G49982
TU63267 other downstream 381047 7933829 ~ 7939771 (+) True G50583
TU63268 other downstream 381047 7933829 ~ 7939771 (+) False G50583
TU63407 other downstream 760643 8313425 ~ 8317602 (+) True AMCG00008664
TU63473 other downstream 897384 8450166 ~ 8666548 (+) True G50747
TU63666 other downstream 1529045 9081827 ~ 9087967 (+) True G50900

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043049 False 5889 mRNA 0.39 9 NC_007134.7 24600494 ~ 24613539 (+)
grasscarp (Ctenopharyngodon idella) CI01000001_08721737_08727450.mRNA False 1727 mRNA 0.48 8 CI01000001 8721737 ~ 8727770 (+)