RNA id: TU64906


Basic Information

Item Value
RNA id TU64906
length 295
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G51875
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13022024 ~ 13023104 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGTGGCCCACAGTCCTCATGTCCACAGTTACCAGTGTCTGTGGACGGACAGGAAAGAGGGGTACGATGGAGATGTTGGGCTCAGGTCAAACCATATTAtggcaaatGTCCTGGGTCCACAacaagggagcaggaaaagacTACACTCAATTATTATGCAATCAACGCTGTGCAATGGTTGCAATCACGATTGGCAAACTTTCTGAACCGATACCATCGAGTGCAGCCCATGCAGACTGTCAGGAGCCACAAGCAAGACGTGTGTATGGATGGGGATATGCAGAACAGATAGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64876 lncRNA downstream 97368 12923204 ~ 12924656 (-) True G51851
TU64825 lncRNA downstream 101233 12920545 ~ 12920791 (-) True G51811
TU64823 lncRNA downstream 113691 12907321 ~ 12908333 (-) True G51809
TU64716 lncRNA downstream 361907 12657226 ~ 12660117 (-) True G51724
TU64717 lncRNA downstream 361907 12658484 ~ 12660117 (-) False G51724
TU64988 lncRNA upstream 112628 13135732 ~ 13136309 (-) False AMCG00008844
TU64990 lncRNA upstream 112628 13135732 ~ 13184356 (-) False AMCG00008844
TU64997 lncRNA upstream 146326 13169430 ~ 13213278 (-) True G51946
TU64989 lncRNA upstream 158811 13181915 ~ 13184356 (-) True AMCG00008844
TU65002 lncRNA upstream 186447 13209551 ~ 13211199 (-) True G51950
AMCG00008834 mRNA downstream 52487 12966348 ~ 12969537 (-) True AMCG00008834
AMCG00008833 mRNA downstream 79788 12926593 ~ 12942236 (-) True AMCG00008833
AMCG00008832 mRNA downstream 104228 12913536 ~ 12917796 (-) True AMCG00008832
AMCG00008826 mRNA downstream 137356 12863623 ~ 12884668 (-) True AMCG00008826
AMCG00008827 mRNA downstream 165799 12847007 ~ 12856225 (-) True AMCG00008827
AMCG00008839 mRNA upstream 7466 13030570 ~ 13046587 (-) True AMCG00008839
AMCG00008845 mRNA upstream 69903 13093007 ~ 13097390 (-) False AMCG00008845
AMCG00008844 mRNA upstream 112647 13135751 ~ 13138152 (-) False AMCG00008844
AMCG00008846 mRNA upstream 132393 13155497 ~ 13158303 (-) True AMCG00008846
AMCG00008843 mRNA upstream 151089 13174193 ~ 13180841 (-) True AMCG00008843
TU64897 other downstream 20136 13000826 ~ 13001888 (-) True G51867
TU64813 other downstream 124890 12895335 ~ 12897134 (-) True G51799
TU64811 other downstream 130427 12890811 ~ 12891597 (-) True G51797
TU64350 other downstream 1695665 11320810 ~ 11326359 (-) False AMCG00008777
TU64340 other downstream 1726274 11235642 ~ 11295750 (-) False AMCG00008777
TU64926 other upstream 67433 13090537 ~ 13097934 (-) True AMCG00008845
TU65001 other upstream 234602 13257706 ~ 13261822 (-) True AMCG00008853
TU65036 other upstream 284318 13307422 ~ 13309425 (-) True G51974
TU65044 other upstream 297170 13320274 ~ 13325227 (-) False AMCG00008860
TU65198 other upstream 662231 13685335 ~ 13686737 (-) True G52099

Expression Profile