RNA id: TU129370


Basic Information

Item Value
RNA id TU129370
length 3372
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G103539
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 6624081 ~ 6627452 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtctgttTGGGCATAGGAATGCaatagcaaatacatttttcacatgtgctcgtattatttatcattttgctttttttgtcagttttactCAGTAATAATTGGCTATAGATCATGCTGATATAATCTTAAActaatatttacacaaaaatgTTATGTATGATTATTCCAAGTACACATCAACTTTATTTCATGGACATGTCTAGGCTTTTAATGACTAACCAATGGCCTTTTCCTTCAATACTGCAGCGCCTGATTTCAGaattcagatatatatatttagattaagGAAGCTTTTTTTTGTCAGCACACTACTGCCACTATCTTGTAGTTCCCAGAAGAGGACAAATTCCCAATCACTGTTGGACTATTTATATCAATATTCGTATCAGGCGTGCTGTGGGTTTACATTGTGCCTGCTGTGTATATTGCAGACGCACATCTGTGCTCTGAAGGCTGTCACTGAGGTGGTCTTGAACGTGAACCGCTAGACTACAGCGCACAAAGAGAATAAAGCTGACATTGTCAGACCAATTCTAATCTAATTTCTGTAGCATGTagtgaaagaaaggaaaataaacaggcaGTACAGGTTTTGacttacagtaaatacaaatgcaattttatatttataatttataatgataatgcaatattatcattcattgttttatacACTCCTTTATCTTTGTAGTCAAttatatcatttgtttttcaccagCACATCAGTGCAATACAATAGTTCCGAAAGTGCACAATCAGAATGAATTTGGATAGCTATCAATGTCCTGAAGGATTGTCAGATTTTGTCGTTTAGTAGACTACACATCTTAAAATAACACTTGAATCAGGAGTCTCCTCCCCTTGTTTCCAGATCTGGTTGAGAGACGAAAATCTTACACATCAAccccatttttatatatatatattttatactatCAATTCAGAATCAAATTATATAAGCACAAGCTACTGAATCATTTTGGTAGTTGAGAAATCGGTAGTATATGTctttgtgatttattaatttattttttaattgctaaaACACACCAAAGCAAGTTTCTCTTCTTCATGTTACTGACTTTTAGAAACGGCTAACatcaaaacaacaggaaaaaagatCATCCCATAAGAATGTAGGATTTCCTGAGATTGAAGTAACAAGAGTATATTAAttctgtacttttatttattatttttgttttccagtaatAGCAAGTCtcaattaaaactttttaaatcacatcaaaacacacagtatagactctatactatactatactgtactatagagaatgtatgtttattaaatatacacattcagttatttataaaaGAAACCTTTTCTTACATGCaccatatatatctatacatataatttcctctttaaatgaatacataatagcACGGGTGTTTACAATCTTGAGTCAGTCTTATaacctttgaaaatatttaaaatgatgctTTTTTCATGAAAGCCATCAGTTTAAATGGTGTGCCCTTCACCCAAAAGGGACTGTTTGAAACTTACACGATCAAAGTATTGAATTTATCCAGACCGATCCCCAAAATAATGCATCTTTGTTTGAGAAGAAGCAGATGGCGTAGGGGCAGACGGAAATCCATTTGTTTAAACAGTGAGCTGAAAACCGCCTTATCAATATTCACATTGATGAACCTATTTAGACATTAAAGTAAATGATACAGGGGCTTACACAAATTATATCAATGAGTTAGAGATAGAAAGCCAGTCTGTGGggttataattaatattttagtagGCAAAGCTATAATACTTTCAGTACCTATAGAATATATTAACAATTAACTACTTTCATTGTCCTTCTCTGAGTTAGTCGGTACATTGCATGTTTCTTCCTCTCTGTAATAACTCAGTGCTGGGACGGAGTTGAGCTGTCTGGAAAAAGGTTGGGAACCCCATTACAGAATGAACTAGCTGTTTTGTCCAGGTGTCTTGTAATGTGTTGATGGACAATGGAAACCAATGTGGTTTTCAAAGGTGGGTTTTCACATCTAATGAGTGTACATACCTAtatctgtgtgcgtgtgagtgtgtgtactgCGCACGCGTGTATGTATGTTGCTCTTTCTATACATATATCTACACTTTTGCTCTGGCAGAAAATAACCTTTAGGGGGAGCTGCTGTGCGATGGGAGAGGCGAGCAGTGGGGTGAGGAGTGTGAAATTCTGAAGGCATCCTAATCTTGAACATCTGAAGGCCCATCTCCTGGTGACTATTTTTGATGCATCTTGCACCCGTGCTTGTGTTGTATCCCATGGGAACAAGATGGCCAGCATTTACAACTCAGACAACGCCGACTTTGACTCTGGGGGGCACTTCTTAACAGTGACTACAATCGCGTGGATAAAACATGTGGAGGTTTTCCGTATCCAATGCTTAAGAGAAGCTGCGTTCAGGTCAGCCAAAAAGAACCAAATTCTGTGATGAGGTTCTCCCTTATGAATATATGCTGAAAGGAACCCATATGCGATATATTAACCTCACCAGTTGGCTTTTCCCAAACCATAGtggtttctgttctgttctattCACATATTGTGTCTGTTTATTCCAAAGTATTGACACCGTAGTGGATTTCcttaatatacatgtatgatGACCCTACCTAAAATAGCAGGCAATTTCAAAGTCTTCTTTTTCCATACCTGTTTGCAGTGGTACAGTAGATTAAGCTTTGGTTAAAGGATACTCTcagatattgtattttatatgtacatgTTTCAGTGTAGAAGCACtactgtgaaaatgtataactGATTACCAATCACAATTGGCTGCCCTCTATGATAGTGACTGAAACTTTAGTTATATTAGATTATATTCTTTCTCATGTTGCTGCACTTGTTAGTTGCTGGCATGTATGGAAGTGAAGTCACAGACTTTATAACGACCTGCTTCTTAAAAGGTTATTGGGAAAGTGATTGGGAAATGTTTTATGGATTTTGAAAAACCTGCTTTTGTTGATGTCTTCTGTAACatgaaactgaaagcaaataCAACTTTCCCCCCCAGAAAAGACTAAAATCAGtcaaaaatcaataataaagtgACTATAACTAATGTATTTAGCACACCACATGACTAACAGTTGAAATTGtggatgtgtaaataaatggtTGTTTTATAACAATAAGTGTACTGTGAGTTTGGGTTTATCCAGGGTTTTGCAAATTCGGTGTAACTAAGGGCGAAATTGAAAGGAAGATTGTGTCATTTCTACTACCCTGTGTTTTTCTATACATACTGTCTGTTCATTCTTTTGTTTCTAGAGGATATTTATGTTCCTCCGTGTATGAATCTTGTGTCACTAATTTGCTATGCTGTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129331 lncRNA downstream 109958 6513863 ~ 6514123 (-) True G103503
TU129292 lncRNA downstream 237477 6384481 ~ 6386604 (-) True G103473
TU129231 lncRNA downstream 649774 5966939 ~ 5974307 (-) False AMCG00010966
TU129136 lncRNA downstream 1008228 5558677 ~ 5615853 (-) True G103362
TU129082 lncRNA downstream 1245855 5359975 ~ 5378226 (-) True G103329
TU129375 lncRNA upstream 1118 6628570 ~ 6628777 (-) False AMCG00010988
TU129387 lncRNA upstream 127841 6755293 ~ 6762139 (-) True G103556
TU129388 lncRNA upstream 132687 6760139 ~ 6762139 (-) False G103556
TU129516 lncRNA upstream 488532 7115984 ~ 7171805 (-) True G103645
TU129531 lncRNA upstream 561633 7189085 ~ 7189583 (-) True G103658
AMCG00010985 mRNA downstream 11329 6594655 ~ 6612752 (-) True AMCG00010985
AMCG00010982 mRNA downstream 63157 6556648 ~ 6560924 (-) True AMCG00010982
AMCG00010983 mRNA downstream 88285 6520570 ~ 6535796 (-) True AMCG00010983
AMCG00010984 mRNA downstream 114158 6475982 ~ 6509923 (-) True AMCG00010984
AMCG00010977 mRNA downstream 181340 6423566 ~ 6442741 (-) True AMCG00010977
AMCG00010988 mRNA upstream 1192 6628644 ~ 6644723 (-) True AMCG00010988
AMCG00010987 mRNA upstream 137374 6764826 ~ 6775506 (-) True AMCG00010987
AMCG00010992 mRNA upstream 298318 6925770 ~ 6938226 (-) True AMCG00010992
AMCG00010997 mRNA upstream 486183 7113635 ~ 7126366 (-) True AMCG00010997
AMCG00011003 mRNA upstream 681187 7308639 ~ 7309421 (-) True AMCG00011003
TU129184 other downstream 875517 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 1483625 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 1973975 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 2438107 4169793 ~ 4185974 (-) True G103112
TU128666 other downstream 3204905 3416368 ~ 3419176 (-) True G102990
TU129762 other upstream 1344172 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 2192099 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 2227453 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 2606959 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 2974432 9601884 ~ 9602741 (-) False AMCG00011084

Expression Profile