RNA id: TU129136


Basic Information

Item Value
RNA id TU129136
length 683
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G103362
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5558677 ~ 5615853 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTACAACTCTTGTGTTGGATATCCATAAGATCAATAACGATGCCAGGTTTATTCACCCCTTGGAAAGGATCCAGCTTGTAGCTTAAGGAGGTGTTTAAGATGATATAATTGCGTATTTTGCCAAAAGCTgagtttattatttctttcagaATGAGAGGGGGGTCATTGCACACTGTcaagggggaagggggggcaGGCGGCAGGTATCAACGAATTTTACAGGAAGTTGAATCCCAGCTCCTAGAGGCATACTGTGCCATGCAGACAGCTACATGCTATAAACACTAATGGGCTTTTGGGCTGAGAAAGGGATACTCTCTGCAATGAGTTCTCCCAGACAATATATGTagtcacctttttttttttattttttattattgcatttgatatttttaaggTTGAAAAAATGTTTCAGCCCCTCCGCTCCCTTATGACATCTCTAGCACATCCACAATGTGTCGTGCACAGCATATGCCAATGTAGACAAACTCCTGTGTTTGTATGATCTTTCTTTTACTTTCTCAAGAAAAACAAGAGGATGTGAAAGCCATGCTTGCCTGTTCTAATTGCTCTATACGTACCTGTTctataaagaagaaaatgtagatACCTGTCACTGCATATAAAGTACAGAGGAAAAAAcacgaacaaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129082 lncRNA downstream 180451 5359975 ~ 5378226 (-) True G103329
TU129054 lncRNA downstream 224420 5331732 ~ 5334257 (-) True G103309
TU129052 lncRNA downstream 266777 5284330 ~ 5291900 (-) True AMCG00010946
TU128989 lncRNA downstream 429536 5115715 ~ 5129141 (-) True AMCG00010937
TU128990 lncRNA downstream 434390 5115715 ~ 5124287 (-) False AMCG00010937
TU129231 lncRNA upstream 351086 5966939 ~ 5974307 (-) False AMCG00010966
TU129292 lncRNA upstream 768628 6384481 ~ 6386604 (-) True G103473
TU129331 lncRNA upstream 898010 6513863 ~ 6514123 (-) True G103503
TU129370 lncRNA upstream 1008228 6624081 ~ 6627452 (-) True G103539
TU129375 lncRNA upstream 1012717 6628570 ~ 6628777 (-) False AMCG00010988
AMCG00010952 mRNA downstream 68795 5482336 ~ 5489882 (-) True AMCG00010952
AMCG00010953 mRNA downstream 80116 5466333 ~ 5478561 (-) True AMCG00010953
AMCG00010950 mRNA downstream 127549 5415532 ~ 5431128 (-) True AMCG00010950
AMCG00010949 mRNA downstream 147882 5400289 ~ 5410795 (-) True AMCG00010949
AMCG00010948 mRNA downstream 175548 5373859 ~ 5383129 (-) True AMCG00010948
AMCG00010955 mRNA upstream 4442 5620295 ~ 5625529 (-) True AMCG00010955
AMCG00010954 mRNA upstream 28423 5644276 ~ 5653028 (-) True AMCG00010954
AMCG00010958 mRNA upstream 39166 5655019 ~ 5673677 (-) True AMCG00010958
AMCG00010960 mRNA upstream 77591 5693444 ~ 5693785 (-) True AMCG00010960
AMCG00010961 mRNA upstream 89914 5705767 ~ 5717218 (-) True AMCG00010961
TU128994 other downstream 418221 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 908571 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 1372703 4169793 ~ 4185974 (-) True G103112
TU128666 other downstream 2139501 3416368 ~ 3419176 (-) True G102990
TU128675 other downstream 2231118 3325858 ~ 3327559 (-) False AMCG00010895
TU129184 other upstream 88917 5704770 ~ 5748564 (-) True G103395
TU129762 other upstream 2355771 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 3203698 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 3239052 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 3618558 9234411 ~ 9236193 (-) False AMCG00011058

Expression Profile