RNA id: AMCG00012187



Basic Information


Item Value
RNA id AMCG00012187
length 849
RNA type mRNA
GC content 0.53
exon number 6
gene id AMCG00012187
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12517368 ~ 12528915 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGAGAGGAGTGGACTGGCTGTCTTTCTGGTGGCAGAGGAAGTCACCTTCTACAAGTGGAGGAATAACAGATTCTGTGCTAAAGTCAATGTTGAAGGCACTTGGGAGGATGATGTTTGTCACGAGACACACTTTTTCATGTGCTACACAGTGGATTTTGAAGGTTACTGGGAAGATCTAGTTTGTGATAAGGAGCATCCTTTCATGTGCTACACAGATGGGGCAACATCATCCTATCAAAACTGGCATGAAAAGGAGCCAAACAGCTTTCAGAACAATGGGAAATGTGGAGGGTTGCAAGCAACTGGTAAATGGAATGACATTCACTGTAACATAAACCTACCATTCTTGTGCCAGGAAGACTTGCGAGAGTTAATCCTGGTAAGGGAGAACAAGACGTGGGAGGAGGCTCTGGATCACTGCCGCTCTCACTACACTGACCTCACCAGCATCGTCTCAGAGAAGGAGCACATCCTCACAGCACTGATGGCCGCAGATGCCCAGACCCTCCACGTCTGGCTGGGCCTGAGGCAGAGCTTCATAACCCGCTCCTGGTTCTGGGTGAACAGGGAGGTCCTGGGGTACCAAAAGTGGGTCCAGGCAGGGCAGCCCCAGTGCCCCCAGTCCAGCTACTGTGGAGCCATGTCCACTACTACTGAGGACCACGCCTGGACTGACCGgccctgtgaggagaggctCAACTTCATTTGCTTCACAGTGCGGCTCCAGTGTCCCGTCCCCCCCGCCACAGTGGCACAGCagctgcagctccagcagctcTTCATAGCCAGGCCTTCCTGGGATCACTGCGGGACTCTGAGAGCGGCGTCTCCAGGACAAtattataca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU169470 lncRNA upstream 154525 12362545 ~ 12362843 (+) True G135007
TU169468 lncRNA upstream 157051 12359997 ~ 12360317 (+) True G135005
TU169406 lncRNA upstream 353172 12163655 ~ 12164196 (+) True G134948
TU169405 lncRNA upstream 353805 12163256 ~ 12163563 (+) True G134947
TU169404 lncRNA upstream 355070 12161458 ~ 12162298 (+) True G134946
TU169511 lncRNA downstream 37297 12566212 ~ 12632060 (+) False G135026
TU169499 lncRNA downstream 39323 12568238 ~ 12716115 (+) False G135026
TU169512 lncRNA downstream 39323 12568238 ~ 12591356 (+) False G135026
TU169497 lncRNA downstream 59109 12588024 ~ 12631810 (+) False G135026
TU169514 lncRNA downstream 59109 12588024 ~ 12631810 (+) False G135026
AMCG00012182 mRNA upstream 63691 12449711 ~ 12453677 (+) True AMCG00012182
AMCG00012181 mRNA upstream 114164 12398604 ~ 12403204 (+) True AMCG00012181
AMCG00012178 mRNA upstream 269403 12245815 ~ 12247965 (+) True AMCG00012178
AMCG00012177 mRNA upstream 278557 12226314 ~ 12238811 (+) True AMCG00012177
AMCG00012172 mRNA upstream 294363 12217706 ~ 12223005 (+) True AMCG00012172
AMCG00012189 mRNA downstream 12920 12541835 ~ 12548644 (+) True AMCG00012189
AMCG00012190 mRNA downstream 37726 12566641 ~ 12569000 (+) True AMCG00012190
AMCG00012186 mRNA downstream 60015 12588930 ~ 12591372 (+) True AMCG00012186
AMCG00012198 mRNA downstream 92096 12621011 ~ 12623081 (+) True AMCG00012198
AMCG00012192 mRNA downstream 122238 12651153 ~ 12654316 (+) True AMCG00012192
TU169428 other upstream 324960 12191555 ~ 12192408 (+) True G134968
TU169416 other upstream 336048 12181061 ~ 12181320 (+) True G134958
TU169413 other upstream 344566 12172538 ~ 12172802 (+) True G134955
TU169350 other upstream 485878 12030897 ~ 12031490 (+) True G134898
TU169151 other upstream 1071205 11436379 ~ 11446163 (+) True G134743
TU169500 other downstream 37297 12566212 ~ 12716115 (+) False G135026
TU169507 other downstream 59109 12588024 ~ 12716115 (+) True G135026
TU169513 other downstream 59109 12588024 ~ 12716115 (+) False G135026
TU169491 other downstream 85058 12613973 ~ 12646572 (+) True G135025
TU169498 other downstream 111929 12640844 ~ 12716115 (+) False G135026

Expression Profile