RNA id: TU169514


Basic Information

Item Value
RNA id TU169514
length 588
lncRNA type read_through
GC content 0.54
exon number 4
gene id G135026
representative False

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12566212 ~ 12716115 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCACCTGCAGCTGTGAACACTGGGTCAGGTTACAGCTCCCTCAGATGGAGGCTTAAACAGAGGAACAGTCTGTGTCTCCCATCAGCTGTAACTGTCTCTCTAGAGCAGGTCTGACGCCGGGACTCGGGGGGACTGATCCAGCGGGTAACAGTGTGAGTCTGATCCTGAAGACCTGTCAGAGGGAGGACTGGAGCTGCTGGGGGCGTCTGACAGACGCACAAGCTTTTCTTCACCTGGGTACAGGGCTTTCTGAGACACTGCTCTCCAGCTGGGATTGGCCTgcgagtctgtctgtctgtcccaggGATGAAGTCTGACCAATCAGAGTGGTTCTGTGTGATTGTCCTGCTGCTCCAGCAGACCTCAGTGTCAGGATCAGAGAGGTTTGAGGTTCTTGGCCCACGTTACCCCATGGCTGTTTACCCTGGAGAAGACACTGTTCTGCCCTGTTACCTctcacccaacatcagtgctGAGGACATGGAGATCAGGTGGTTCAGAGAGGTTTGAGGTTCTTGGTCCATGTTACCCCATTGCTGTTCACCCTGGAGAAGACACTGTTCTGCACTGTTACCTCTCacccaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169470 lncRNA upstream 225181 12362545 ~ 12362843 (+) True G135007
TU169468 lncRNA upstream 227707 12359997 ~ 12360317 (+) True G135005
TU169406 lncRNA upstream 423828 12163655 ~ 12164196 (+) True G134948
TU169405 lncRNA upstream 424461 12163256 ~ 12163563 (+) True G134947
TU169404 lncRNA upstream 425726 12161458 ~ 12162298 (+) True G134946
TU169515 lncRNA downstream 4889 12636699 ~ 12699876 (+) True G135027
TU169508 lncRNA downstream 21485 12653295 ~ 12716115 (+) False G135026
TU169517 lncRNA downstream 60858 12692668 ~ 12693815 (+) True G135028
TU169522 lncRNA downstream 70513 12702323 ~ 12724194 (+) True AMCG00012191
TU169523 lncRNA downstream 88052 12719862 ~ 12721164 (+) True G135033
AMCG00012190 mRNA upstream 19024 12566641 ~ 12569000 (+) True AMCG00012190
AMCG00012189 mRNA upstream 39380 12541835 ~ 12548644 (+) True AMCG00012189
AMCG00012187 mRNA upstream 59109 12517368 ~ 12528915 (+) True AMCG00012187
AMCG00012182 mRNA upstream 134347 12449711 ~ 12453677 (+) True AMCG00012182
AMCG00012181 mRNA upstream 184820 12398604 ~ 12403204 (+) True AMCG00012181
AMCG00012192 mRNA downstream 19343 12651153 ~ 12654316 (+) True AMCG00012192
AMCG00012191 mRNA downstream 83186 12714996 ~ 12721624 (+) False AMCG00012191
AMCG00012193 mRNA downstream 126211 12758021 ~ 12758746 (+) True AMCG00012193
AMCG00012194 mRNA downstream 130814 12762624 ~ 12763676 (+) True AMCG00012194
AMCG00012199 mRNA downstream 155590 12787400 ~ 12788020 (+) True AMCG00012199
TU169428 other upstream 395616 12191555 ~ 12192408 (+) True G134968
TU169416 other upstream 406704 12181061 ~ 12181320 (+) True G134958
TU169413 other upstream 415222 12172538 ~ 12172802 (+) True G134955
TU169350 other upstream 556534 12030897 ~ 12031490 (+) True G134898
TU169151 other upstream 1141861 11436379 ~ 11446163 (+) True G134743
TU169498 other downstream 9034 12640844 ~ 12716115 (+) False G135026
TU169493 other downstream 18829 12650639 ~ 12716115 (+) False G135026
TU169494 other downstream 77080 12708890 ~ 12716115 (+) False G135026
TU169504 other downstream 83186 12714996 ~ 12716115 (+) False G135026
TU169527 other downstream 138973 12770783 ~ 12777157 (+) True G135037

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2160264 False 1441 lncRNA 0.43 5 NC_048587.1 62134518 ~ 62200891 (+)