RNA id: TU169468


Basic Information

Item Value
RNA id TU169468
length 321
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G135005
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12359997 ~ 12360317 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atcgagggaaagatgaatgcagcaatgtacagagacatccttgatgaaaacctgctccagagtgctctggacctcagactggggtgaaggttaatcttccaacaggacaacgaccctaagcacacagccaagataacaaaggagtggctacaggacaactctgtgaatgtccttgagtggcccagccagagcccagacttgaacccgattgaacatctctggagagatctgaaaatggctgtgcaccgacgctccccttccaacctgatggagcttgagaggtcctgcaaagaagaaatgggagaaactgcccaaaaatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169406 lncRNA upstream 195801 12163655 ~ 12164196 (+) True G134948
TU169405 lncRNA upstream 196434 12163256 ~ 12163563 (+) True G134947
TU169404 lncRNA upstream 197699 12161458 ~ 12162298 (+) True G134946
TU169403 lncRNA upstream 198744 12160595 ~ 12161253 (+) True G134945
TU169402 lncRNA upstream 200568 12159218 ~ 12159429 (+) True G134944
TU169470 lncRNA downstream 2228 12362545 ~ 12362843 (+) True G135007
TU169511 lncRNA downstream 205895 12566212 ~ 12632060 (+) False G135026
TU169499 lncRNA downstream 207921 12568238 ~ 12716115 (+) False G135026
TU169512 lncRNA downstream 207921 12568238 ~ 12591356 (+) False G135026
TU169497 lncRNA downstream 227707 12588024 ~ 12631810 (+) False G135026
AMCG00012178 mRNA upstream 112032 12245815 ~ 12247965 (+) True AMCG00012178
AMCG00012177 mRNA upstream 121186 12226314 ~ 12238811 (+) True AMCG00012177
AMCG00012172 mRNA upstream 136992 12217706 ~ 12223005 (+) True AMCG00012172
AMCG00012168 mRNA upstream 218522 12132247 ~ 12141475 (+) True AMCG00012168
AMCG00012167 mRNA upstream 264058 12085358 ~ 12095939 (+) True AMCG00012167
AMCG00012181 mRNA downstream 38287 12398604 ~ 12403204 (+) True AMCG00012181
AMCG00012182 mRNA downstream 89394 12449711 ~ 12453677 (+) True AMCG00012182
AMCG00012187 mRNA downstream 157051 12517368 ~ 12528915 (+) True AMCG00012187
AMCG00012189 mRNA downstream 181518 12541835 ~ 12548644 (+) True AMCG00012189
AMCG00012190 mRNA downstream 206324 12566641 ~ 12569000 (+) True AMCG00012190
TU169428 other upstream 167589 12191555 ~ 12192408 (+) True G134968
TU169416 other upstream 178677 12181061 ~ 12181320 (+) True G134958
TU169413 other upstream 187195 12172538 ~ 12172802 (+) True G134955
TU169350 other upstream 328507 12030897 ~ 12031490 (+) True G134898
TU169151 other upstream 913834 11436379 ~ 11446163 (+) True G134743
TU169500 other downstream 205895 12566212 ~ 12716115 (+) False G135026
TU169507 other downstream 227707 12588024 ~ 12716115 (+) True G135026
TU169513 other downstream 227707 12588024 ~ 12716115 (+) False G135026
TU169491 other downstream 253656 12613973 ~ 12646572 (+) True G135025
TU169498 other downstream 280527 12640844 ~ 12716115 (+) False G135026

Expression Profile