RNA id: AMCG00012193



Basic Information


Item Value
RNA id AMCG00012193
length 726
RNA type mRNA
GC content 0.57
exon number 1
gene id AMCG00012193
representative True

Chromosome Information


Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 12758021 ~ 12758746 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCGGCAATAATGACAGGTCTGATCCCCATCCTGCGCACAGCAGTGGACGCCTCCTCAGACTATAAGGGCCGGACGCTGTGGTTCGGCTTCCTCAGCATCCGCCTGGTGGTCCTGTTTGTGGCACAGCTCCCATGGTCGAAGCTGGACACGGACTTCAGCTGCAACACAACGAACCGTGAGCTATGCCACCGAGCCTGCTACAACCAACACTTCGATGTGCCGATTGTCATGGCGTGGAACTTCTGCTACGTGCTCCTCATGCTCTCGGTGCTGATCATGGAGCTCCTTGCCGTCAAGATGATCAAGAAGGGCAAGAAGAAGCCCAGCAAGGATGCGGGGACAGAGATTGAGATGGAGGAGAGCctgacagaaaccaaggagcaGGATGGGCCCAAGAGGAAGATGGTCATCGACTTCCACAAGCACAAGGCCAGCCTGCTCTTCTACCTGTTCTGCGTCCTCCTGCGCGGCACCATTGAGGCCTGGTTCCTGTACGCCCTGCTCTTCTGGGACCTCCCCAAAGTGGACGATTCACCCATCATCTGCCGGACCAGTCTGTGTCCCGGCACCTACGTGTGCGTGGTGCGGGCGTGCGCTGAGAAACGCATGTCCATCTACTCCCTGGCTTCCTTCTCTGCTGTGGTCGTCATCACCAGCCTCTTCTTCTTCCTATACTCTATGTGCCACTACCTGATTATAGGAAAGCACAAGAGCAGCCGGTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU169522 lncRNA upstream 33827 12702323 ~ 12724194 (+) True AMCG00012191
TU169523 lncRNA upstream 36857 12719862 ~ 12721164 (+) True G135033
TU169499 lncRNA upstream 41906 12568238 ~ 12716115 (+) False G135026
TU169508 lncRNA upstream 41906 12653295 ~ 12716115 (+) False G135026
TU169515 lncRNA upstream 58145 12636699 ~ 12699876 (+) True G135027
TU169528 lncRNA downstream 25342 12784088 ~ 12786060 (+) True G135038
TU169539 lncRNA downstream 77506 12836252 ~ 12840315 (+) True G135045
TU169548 lncRNA downstream 114472 12873218 ~ 12895581 (+) True G135051
TU169550 lncRNA downstream 131024 12889770 ~ 12901593 (+) True G135053
TU169552 lncRNA downstream 138284 12897030 ~ 12897756 (+) True G135055
AMCG00012191 mRNA upstream 36397 12714996 ~ 12721624 (+) False AMCG00012191
AMCG00012192 mRNA upstream 103705 12651153 ~ 12654316 (+) True AMCG00012192
AMCG00012198 mRNA upstream 134940 12621011 ~ 12623081 (+) True AMCG00012198
AMCG00012186 mRNA upstream 166649 12588930 ~ 12591372 (+) True AMCG00012186
AMCG00012190 mRNA upstream 189021 12566641 ~ 12569000 (+) True AMCG00012190
AMCG00012194 mRNA downstream 3878 12762624 ~ 12763676 (+) True AMCG00012194
AMCG00012199 mRNA downstream 28654 12787400 ~ 12788020 (+) True AMCG00012199
AMCG00012200 mRNA downstream 31781 12790527 ~ 12799451 (+) True AMCG00012200
AMCG00012206 mRNA downstream 274362 13033108 ~ 13065375 (+) True AMCG00012206
AMCG00012207 mRNA downstream 310458 13069204 ~ 13074014 (+) True AMCG00012207
TU169500 other upstream 41906 12566212 ~ 12716115 (+) False G135026
TU169507 other upstream 41906 12588024 ~ 12716115 (+) True G135026
TU169513 other upstream 41906 12588024 ~ 12716115 (+) False G135026
TU169498 other upstream 41906 12640844 ~ 12716115 (+) False G135026
TU169493 other upstream 41906 12650639 ~ 12716115 (+) False G135026
TU169527 other downstream 12037 12770783 ~ 12777157 (+) True G135037
TU169530 other downstream 26462 12785208 ~ 12786060 (+) False G135038
TU169576 other downstream 209631 12968377 ~ 12974053 (+) True G135070
TU169632 other downstream 510450 13269196 ~ 13276971 (+) True AMCG00012217
TU169557 other downstream 663689 13422435 ~ 13425359 (+) True G135058

Expression Profile