RNA id: TU169086


Basic Information

Item Value
RNA id TU169086
length 5787
RNA type TUCP
GC content 0.43
exon number 2
gene id G134697
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 11242229 ~ 11293899 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtttttttttttttttcatgtcatttttaaatttttaattttgattttcatGTAGTTTTCTTCAAACCCAACAGTTATTCAAAATGgcaagattttaaaaacaagcaagtTTACAAAAAACTCAACAGGACTCCCAAAGGCTGGGCAGACATGGACAAACTGAGCaacaacttaaaaacacaatgtatataaaaaacaaaacaaaaagaaaccgGGGTGGGTGGAGGGGATTTTACAGAGGACGTCAGAGGGGTGAGGGTAGGAGGTGGAATACTGGTCCCAGTGATCGACAGAGGAGATTAGTACGGCCTGTCTCTGCGATCCTGTCTGTGCTCTCCTCTGcaagaaaaagcaaacagagTTTAGAGCAGGAATGCCCCTGTAAACAATGTGAAGTCTATAGTAACTGTGTTAAGCAAGACATCTCTTAATATTCAACATAGTCTGCATTATGCAAGCTTGAGGCAAGAACCTCGTGACGGAGGTTTCTAAAATTCAGGGTTCATTCAGACCGGCGGTTCTCAGTGCAATTCCCAGACCGATGCAGAGTTTGATATGGAAATTCTGACCGTTCAGTTCATACCTTGCATTTCAGTCATTAAGTTAATTGGATAAACTttccacaattaaataaaaccaaaactcATCCAAAATTTCTTACTGGCGATGCAACACCCTTCATCCCATTAGGATGGAAAACTGGAGAGGACGGGGTCTGTAGTGCATGTGCAGGTTTCAGGGTTGTAGGTTATTGTGGGTAAAGATCTATGCCTCAAATAAGCGTTCATTTCCTGTTAatcaacattacattttggTCATCTGGTATTTAGAGATATTTGAGGTCTGAGAAACAATGTTAGTTTGAGCACTGCTGTACAGGGAAGGTTGGCCTTACCTGCCGTCCATTTTGCCCGGACCAAAGCCGCCGCGGTCTCCTCCACGGCCCCCTCGGAAGCCCCCACGGTCTCCCCCTCGGCCACGGAAGCCACCTCGGTCAAATCCACCACGGCCACCTCTGTCACCGCCATATCCACCTGGGTGAGAGAGGGCAGGGTTAAGATTTTTCAGACACCCTCAAAGGCGACCGTTTACACAGTCATTTCAAAGCACAGTAGGCAATGCGTTTTGTACATAACACATAAATCCAAGTACAGTGAGTTGCCAAGTGCAGATATCCGTTAAGCCCTTGCtgtgtgctaaagggaggggtaTGCATAGGAATACTATTGTGTTAAATGGTGATCAAAAGACGGACTAACCCACTGTAGAGCAAGGAAGCAAaatatggggggggggaaagaggaGAAACATTTGAGAAGTCCTTGCATTGACACTCACCTCCCATTGGGGGGAGCCCTCCTGCCCCTTCTGGCTTGGGGGCTTTGCACTGATTACACTCATTCCTCCAGGAGAAGTTCAGATTACCACACACCCTGCATGGAAGAGCAAAAGGTTAATATTGATAATGGGGACTACAGGTCTAACTGGTAGAGATGCACTTGAGAGGATCTGTACCCTGGAAGAGGTAAAGACACTGCTTAACATccacttaaacaaaacaaatactataaaaGGTAGGTTAAAAATAGACAATGCTTCAATTAGTGCAAGACAACCAAGTTCTagatgcacaaacacaaaccaaaggGCATCGGTCTCAGAGGTAATGGTCCAACAACTCACGGGTTTGAGCACTTCCAGTCTCCGGCCCTCtgctgtcctcctcctcctccaccgcCGCCGCCACCACCTCCATTGTTGCTGGGATAGCCGCCTCCCCGGCCACCTCCAAACCCACCTCCTCCTCTACCCATGGGCCCTGAGACGAGATGAAGACGTAGAGCAGGGGGGTTAATACAGGTACCATTAAACGTAACTGCCAACTGTGTAGGTGGACCCTGCACCAAGCTTTGCAATAAAGACTGAGTGGACAGTAAATGCAGATCAACTAGACCATGGTTACTTGGTGTGGTTCACAAGGGTTTCACACAGCAGGCAGTACAGATGCCACAGATGTGAAGCTTTAACAGATCAAACGGGAAATACAGCAAAGAAACTGCAGGATAGGAGAGAGGACGGGCGGCTGGACCAACGTACAGGACTCACCTCCCCGGCCTCGTCCGCCCCTCATGTTGCCGCCGCCTCGTCCGAAGTCCGCCCTGCGTGTAGCGAAGGACACCTTGATAGGATTTCCATTGAACTCCTTACCTGAGGAGAGACATTCAATTAAGACCTATTCGGGGGGGGGCAACCAACACCACCATCAGCGGTGTTTGTGGAATGTTTAGATATAAGGCAAATTCACTGAACCCCTAATTTGCCATTCACCCACCCATAGTAGAATAAGGAAAATGTTCAATACCCTCACCATCAAACCAGTCGATGGCTGCCTTGGCGGAGGGGGGGTCATCGAAGGAGACCGTGGCTTCTCCCTTCAGCTTCCCCGTCTCCCGATCAGTGTACAGGTTGATCATAGGCAGGCCGGTTTTCTTGTTGATCTGGGAGCAGAAATGGGACACAGTTGAAGCAGACACTATGGGACACCATAGCAGGTTAGCGGCACAAGCAAGGGGGTTTATTGCAGAAACTCGGAACACTTGATGAGAACGATCTGGGTGTGCTGTACCTTAATGATACCAATCTGCTTGAAGAAGTCAGCCACCGAGTCCACGGTGCAGCTGTCTCCCAGACCCTGGACAAAGATGGTGTTGTTATCCGAGTTATCCTGCTCTTGCACTGTAGTGGACAGAGGGAGAGGTCCGTTACACCAATAGTGATTTAAATCAGCCAGAAGTATAACCACAGGATGTTAACATTATAACTGGGTGTCAATGAGCACACATGGATTTGTGCATTTATAGCGCAGCATTAGTGTGGGAAGGCTGCAACCCCCCCATAAGAAACTTCATTGGAGCAGCAGAACTGAAACTACAGGGAAACAAGTGCCACAGCAAAAAAGCAAGACCGTACAAGGCTCAAGCAATGCATTACACCATAAAAGTAATGTAATTACCAACTCCAAGAGTACTTACTGGGATTGGGGCCCCCAGGTCCCTGGTCTCTAGGTCCTtaaggagagggaaagagagggagagaagactTAAGTACAGAGAGACTGATGACTGAGCAACATAGTCTTCCACACATTGCCTTTTGCCATGAACATGGGCATTGTCCCAGGAACAGAAACCCATCCACACACCCGTTAACAGTAGTACAGCCACACCGGGATCATGCAGTGGTCCCTTAATAAAAAGAtgccctaaaaaaaaaaaacgtgcgCGTTTCTATACAATCACATAATGGCACATTAGGTTTACACTACATGATACCATTAAAAGATTACAATTTCAACTCTTCTGTTAATTCCCAATAAGACATGCATTAGTCCCCTTTAAATAAGTATGAAGTACAAAGTAACCATTTGCTTTTATAAACTCTGAACCCAGGGAATAGGTAGACCATTTTTGAACATAGCATTTCATGAGATTTCAGACATGTTCAGCTGTATCCACTGATAAAGCCACAGTCCATTTGTTTCAAATATGGTTTTAAAGAAACCTGCGACAACAGTATTACCAAGGTCACAACACCTAGTGAGCAACATGCATTTTTCCATTACAAACAGGACTATGAAACTTAATTTCTCCATTTAACACTCCAAGGAAACCATTTGGATTTGTTCCCCCCCCTCCTCTTAAGTTCTACACCAaggtccttaaaaaaaaaaatcaagtaacATGCAATACACCCCTGACAAAGGACTATACAAGTTGACTGTTCAATACCGgtgaatgtaaaattaaaaaccatcACTTTTTACAGCTTTAAGTTTTCTGGAACCAAAGTGAAACCATGCGTTTTAATAACCACCCTTGTAAACTTGAATGTTTGAGAACCCCAACATTTTTTAACCCCTGCCTCTCTCAAATCTAAAcctttacatacatttgttaCAACCACCCCAGTCTGGGTACTGGACCCATTCTCAGAGTCACTTGCAAAACACACTGGGAGATACTGGAGTTTCAATATGAAACCACACAATTCCCCACCCCTCCCACACAATGAAATTAAGCCTTGCAGGCTTATACCACCATTTCAAAGTATACAGCCTGAACTTCTTACCTCAAAACCAAAACACCAGAAACACTGGTGGTTCACACACCCAAACATTGAGAATCTTGAATCCATCCTTCTACACTTACACACTGTGTAATGTTAGATTTTTGCAAAACATGTACACAAGTATTGTTCCCCTTGAAGTGATCACCTTGAGCAAATGTTTAAGATGCACATTCGTGAAGCACACCTACATTTGGGAATGTTCAGTATACAGCCATCTAGAAGGAGAGCAACTTTCCAATATGACTTTCATTTTACAGATACAAAACCACCACAGGGTTTTAAGGACCCAACTCCTATACAGATCTATTTTCAGGTCAGTGCACAACTTGAAAGTTACCAATGTACGTGATTTATCCACTCAGAAACCACACCATTAAGTAACGCACCCGACAATGGCCTGTTCTTAAAAGACTTACGGAGAGATTGACAATACTTCGAGACAAACCACCTAGagagtttgtttgttcttaCAGGACAAGACCATCCTTAAAACATTCACTTAGATATTAAAAGTTGCATCTTTACAATAAACCCTATAGCTTTAAGTCACAGAGCTACATATTATGGTCTTGGAGCCTATACAGATTAGCATTATATTGAACTGTACAccttttcaaaaaaaaaaataataaaactgcccTCTACTTTAAATCTGAAACCAAAATGTAAGTGTACgtgctttaaatttaaaattgattaatcCACACCAACTTGACTGAAATTTGGTTCCAATTCCGGCAACCTTATTTGACAAAACACCCAGTAAACACCCACCCACTCCACCCAGAATCAATTCACTGGATGAGCTGTACTTGTGTAGAAAGGAACATTTCTCATTGAATCCTTTAACTTTAAACCTACATTCACATTATAAATATTGAAGATAAAATATTGTGCcagacattaaaattaaaaccagaaCACTCCCCTTCCCTTTAACTCAAGGGTGAAGACCTTTTGGCAAGCTTCATTAAAAAGCCTTTACCATGGAGATTTAATTCAACTTACTTCCTCTATCACGGAGAACACTAACCTTCCAGCTATTATAATGTGGCATTTTATTGGATGTTCACAAGGTTATGTCAAGTGTCCTTGGCTGATTGAATCTCAAAAGTTAAAGACTAgaaccatttatattttaaatgattgcaaTTTAAATCAGAACGTGATTGAGTAGCACCacacatttgcttatttatatttgagAACAACCACAGCACTCAGACCACAAGTCTGGCAAGACAGTCTGCAACCTCAAGTTGCTCTTTCAGCTCCCCCATGAACCCAGGCACGAGGCTGAGCAGCTTTACTCCTCTCCACCTTTAGCAGTAAGCAGGTAAACCACGAACTGTTTGAACCCTCACAGGCAACAACTACAGAGATCGTTTGTAGGTTTTGTGCAGTTCAGAACTATGACCCTTACCAGAGCAAAAACCTACAAGATGCGATAGAATACCATGATAATGCATTCCTGAATGACACTGGTTGGTTCGAGAGCTGTACTAGAACCAGCACAACCTCCgatcatgaataaaacatggaaGTGCATGCGAGTTGGTGAAAGTCTCAGTTGGCAATGTAGAACATGTTTCAGAAAACTGtacaagagacctgggactgaatacatcaataaatgGGCTGTCCAGATTGAAATcacca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169080 lncRNA upstream 12799 11233681 ~ 11233883 (+) True G134692
TU168992 lncRNA upstream 190998 11049065 ~ 11055684 (+) False AMCG00012112
TU168979 lncRNA upstream 263888 10967276 ~ 10982794 (+) True G134615
TU168978 lncRNA upstream 275594 10967276 ~ 10971088 (+) False G134615
TU168958 lncRNA upstream 311575 10933715 ~ 10935107 (+) False G134613
TU169092 lncRNA downstream 9812 11300334 ~ 11302065 (+) True G134698
TU169157 lncRNA downstream 213438 11503960 ~ 11504648 (+) True G134749
TU169172 lncRNA downstream 328655 11619177 ~ 11870630 (+) True AMCG00012152
TU169183 lncRNA downstream 420728 11711250 ~ 11766411 (+) True G134766
TU169199 lncRNA downstream 528735 11819257 ~ 11844832 (+) True G134779
AMCG00012121 mRNA upstream 22398 11213608 ~ 11224284 (+) True AMCG00012121
AMCG00012123 mRNA upstream 51334 11186768 ~ 11195348 (+) True AMCG00012123
AMCG00012112 mRNA upstream 185652 11055439 ~ 11061030 (+) True AMCG00012112
AMCG00012108 mRNA upstream 265816 10980678 ~ 10980866 (+) True AMCG00012108
AMCG00012106 mRNA upstream 329544 10913410 ~ 10917138 (+) True AMCG00012106
AMCG00012127 mRNA downstream 11932 11302454 ~ 11312044 (+) True AMCG00012127
AMCG00012128 mRNA downstream 69717 11360239 ~ 11382588 (+) True AMCG00012128
AMCG00012140 mRNA downstream 89551 11380073 ~ 11380772 (+) True AMCG00012140
AMCG00012136 mRNA downstream 96051 11386573 ~ 11388762 (+) True AMCG00012136
AMCG00012138 mRNA downstream 113138 11403660 ~ 11405016 (+) True AMCG00012138
TU168966 other upstream 316229 10926606 ~ 10930453 (+) True G134613
TU168610 other upstream 928864 10303273 ~ 10317818 (+) True G134343
TU168648 other upstream 938843 10252810 ~ 10307839 (+) True G134373
TU168604 other upstream 987458 10223004 ~ 10259224 (+) True G134337
TU168639 other upstream 1106225 10139954 ~ 10140457 (+) True G134366
TU169151 other downstream 145857 11436379 ~ 11446163 (+) True G134743
TU169350 other downstream 740375 12030897 ~ 12031490 (+) True G134898
TU169413 other downstream 882016 12172538 ~ 12172802 (+) True G134955
TU169416 other downstream 890539 12181061 ~ 12181320 (+) True G134958
TU169428 other downstream 901033 12191555 ~ 12192408 (+) True G134968

Expression Profile