RNA id: TU168979


Basic Information

Item Value
RNA id TU168979
length 408
lncRNA type sense_over
GC content 0.47
exon number 2
gene id G134615
representative True

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 10967276 ~ 10982794 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGCATTGGATTGTTCACCCACTAATAGGTAACGTGAGCTGGGTTTAGACCGTCATGAGACAGGTTAGTTTTACCCTACTGATGATGTGTTGTTGCAATAGTAATCCTGCTCAGTACGAGAGGAACCGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAAAAGGGCAAAAGCTTGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACTTTTTGCGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACGGGGATAACTGGCTTGTGGCGGCCAAGCGTTCATAGCGACGTCGCTTTTTGATCCNNNNNNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168958 lncRNA upstream 32169 10933715 ~ 10935107 (+) False G134613
TU168877 lncRNA upstream 113985 10849858 ~ 10853291 (+) True G134556
TU168833 lncRNA upstream 283179 10633508 ~ 10684097 (+) True AMCG00012088
TU168807 lncRNA upstream 368435 10598539 ~ 10598841 (+) True G134498
TU168804 lncRNA upstream 371870 10594849 ~ 10595406 (+) True G134495
TU168992 lncRNA downstream 66271 11049065 ~ 11055684 (+) False AMCG00012112
TU169080 lncRNA downstream 250887 11233681 ~ 11233883 (+) True G134692
TU169092 lncRNA downstream 317540 11300334 ~ 11302065 (+) True G134698
TU169157 lncRNA downstream 521166 11503960 ~ 11504648 (+) True G134749
TU169172 lncRNA downstream 636383 11619177 ~ 11870630 (+) True AMCG00012152
AMCG00012106 mRNA upstream 50138 10913410 ~ 10917138 (+) True AMCG00012106
AMCG00012107 mRNA upstream 58231 10905052 ~ 10909045 (+) True AMCG00012107
AMCG00012110 mRNA upstream 77029 10879944 ~ 10890247 (+) True AMCG00012110
AMCG00012105 mRNA upstream 147690 10816588 ~ 10819586 (+) True AMCG00012105
AMCG00012099 mRNA upstream 150948 10812697 ~ 10816328 (+) True AMCG00012099
AMCG00012112 mRNA downstream 72645 11055439 ~ 11061030 (+) True AMCG00012112
AMCG00012123 mRNA downstream 203974 11186768 ~ 11195348 (+) True AMCG00012123
AMCG00012121 mRNA downstream 230814 11213608 ~ 11224284 (+) True AMCG00012121
AMCG00012122 mRNA downstream 264388 11247182 ~ 11248652 (+) True AMCG00012122
AMCG00012127 mRNA downstream 319660 11302454 ~ 11312044 (+) True AMCG00012127
TU168966 other upstream 36823 10926606 ~ 10930453 (+) True G134613
TU168610 other upstream 649458 10303273 ~ 10317818 (+) True G134343
TU168648 other upstream 659437 10252810 ~ 10307839 (+) True G134373
TU168604 other upstream 708052 10223004 ~ 10259224 (+) True G134337
TU168639 other upstream 826819 10139954 ~ 10140457 (+) True G134366
TU169090 other downstream 259435 11242229 ~ 11290522 (+) False G134697
TU169086 other downstream 263888 11246682 ~ 11290522 (+) True G134697
TU169087 other downstream 301956 11284750 ~ 11293899 (+) False G134697
TU169151 other downstream 453585 11436379 ~ 11446163 (+) True G134743
TU169350 other downstream 1048103 12030897 ~ 12031490 (+) True G134898

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_07731299_07746699.mRNA True 3691 mRNA 0.44 15 CI01000300 7729614 ~ 7746699 (-)