RNA id: CI01000300_07731299_07746699.mRNA


Basic Information

Item Value
RNA id CI01000300_07731299_07746699.mRNA
length 3691
RNA type mRNA
GC content 0.44
exon number 15
gene id CI01000300_07731299_07746699
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 7729614 ~ 7746699 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGAGCTGGACCCGCACACCAGGACTCAGTCCAGCCCGGTTCGGCTCGGTTCGGTGAACGGGACACAGCGGGGATTTAAACGACAGAGCCCGACCAGAGATGGAGAGACGCAGACTGATGTGAACAGAACCAGCGCTATGGAGATACATCCACTATGCACTAAGCTTTGCCATCATAAAGCTGTGGAGCTGAAGGATGATGTGTGTGAGAAACAGAGTGCAGTCACCATAAATCCACGTCACATGAAGAAAGCCTTCAGGATCATGAACGAGCTCCGCAGTCAGAGTGTGCTGTGTGATGTCACCATCATTGCGGAGGATGTGGAGATAGCTGCACATCGAGTCGTCTTAGCTGCTGGGAGTCCTTACTTCCATGCTATGTTTACAGGAGAGATGACCGAGAGCCGTCAGAAGAAGGTTCGAATCAAAGAGATTGACGGCTGGACTCTGGGAATGCTGATTGATTATGTTTACACTGCTGAGATCCAAGTAACGGAGGAGAATGTGCAGGTGCTCTTGCCTGCCGCTGGTCTGCTGCAGTTGCAGGAAGTTAAAAAGGCCTGCTGCGAGTTTCTCATAACTCAACTTCACCCAACCAACTGCCTCGGTATCCGCGCCTTTGCCGATTTGCACGCCTGCATGGAGCTGCTCAATCTCGCCAACACGTACGCAGAGCAGCACTTCTCAGAGGTCGTGCAGAGTGAGGAGTTTCTCAATCTGGGCATGGAGCAAGTCTGCAGCCTCATAGCAAGTGACAAACTGACCATTCCATCAGAAGAAAAGGTGTTTGAAGCGGTCATAGCGTGGGTCACGCATGATAAAGATGTGCGTCAGGAACACATGGCTCATCTGATGGAACATGTTCGCTTGCCCCTTCTTTCCAGAGAATACCTCAGAGTGGAAGAGGAAACTCTAGTAAAGAACAGCAGCGCCTGTAAAGACTACCTTATTGAAGCCATGAAGTACCACCTGCTGCCTGCTGAGCAGCGCTCCATGATGAAGACCATCCGCACCAGAGTGAGAACACCCATCAGCTACCCAAAGGTGATGGTGGTAGTGGGGGGACAGGCCCCTAAAGCCATTCGCAGTGTGGAGTGCTATGATTTTGAGGAGGAGAGATGGTTCCAAGTGGCAGAATTACCCTCCAGACGATGTCGAGCAGGTGTGGTGTACATGGGCGGTGTTGTGTATGCTGTTGGGGGTTTCAACGGGTCATTGCGTGTGAGAACGGTGGATGCTTACGACCCAGTAAAAGATGAGTGGTGTTGCGTCAGCAGCATGCAGGACCGGAGGTCAACACTAGGGTCCGCTGTCCTCAACGGACTGCTGTATGCTGTAGGGGGCTTTGATGGCAGCACAGTATCTTTGCAGCACCAAGTTATTATTAGGTACAGTGCAGTTATTGATAGTAAATTATTTCACAACTTTTATACACATAGGAAAAAGTACAGAGGTCTGGGCCTCAAAGGTTTAGCTACTGTAGAAGCATATAACGCTAAGGCCAATGAGTGGTTCCACGTCAATCCCATGAACACACGACGTAGCAGTGTTGGAGTCGGCGTTGTTGGAGGTTTGCTTTATGCGGTCGGAGGGTATGACGGAGCAACACGTCAGTGTCTGAGTACTGTTGAGGCCTATAACCCCAACACCAATGAATGGACTTACACAGCAGAGATGGGAACCCGTCGTAGTGGTGCAGGTGTTGGTGTGTTAAAAGGTCTGCTGTATGCAGTAGGTGGGCACGATGGCCCTTTGGTTAGAAAGAGCTGTGAGGTGTATGACCACGCCACTAACACATGGAAACAGGTGGCTGATATGAACATGTGCCGCAGGAACGCAGGTGTGTGTGCCGTGAATAACCTGCTCTATGTGATTGGTGGTGATGATGGCTCGTGCAACCTGGCTTCAGTGGAGTTCTACAATCCAAACACTGATAAATGGACCCTACTGCCCACCTGCATGAGCACAGGACGCAGCTACGCAGGTCAGAAAAAGAGATTATGTTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCATATTAGTGGGTGAACAATCAAACGCATGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAATGGCAGACTACTTGTATATTGTTTTTATAAAAAAAATAAATAAATAAATACTTATAGTCAGCAAGGACGCATTAAATTGATCAAAAGTGACAGTAAAGACATAATTTTACAAAAGATTTCAATTTTATATAAATGCTTTCGTTTTGAACTTTCTGTTTATAGAAGAATCCTGAAATAAAGTATCATGGTTTCCACAAAAATATTAAGTAGCACAACTGTTTCAATGTTGATAATAAGAAATGTTTCTTTAGCAGCAAATCAGCATATTAGAATGATTTCTGAATGATCATGTGACACTGAAGACTGGAGTAATGATGCTGAAAATTCAGCTTTGCCATCAGAGGAATAAATTACATTGTTTATTTGAAATATATTAAAACAGAATACAGTTATTTTAAATTGTAATATGTCACAATTTTACTGTTTTTACTGTTGATTTGATCTAAGAAGTACAGCCTGGTGAGCATAAGAGATTTATTTCAAAAACAGTAAAAACAAATATGCCACTGCCAAAACAGCCTAAAATGGTTTAAAGTTCCCCTATTATGCTATTTTAAAGTTTCCTAATTTTGTTTTAGAGGTCTCCTACAATAAGTTAGGTTTACATTCATCCAAGGTCAAAAAACACTTTAATTTTATCATAATATACATCACACATCACCTCATTTCTCAAAGAGTCTGAAAATGGTTCGTTCGAAGATTCAGTCTCACTAAACCCCTCCTTACCACCAGCATGCTCTACTCTGATTGGTCAGACGGCCCAGTCTGTTGTGATTGGTCTACCGCTTACAGTGCGTGTCGGAAACGAAATGCCTATTACCATATCTGAATTTCAGCTCTGAAGGCTTCCTCAGTGCTTGATACACAGTCATATGAATGATGGCGACAGTTTTTCCGTATATCAATTCCAGCACGAGTCCTCATCCTTTTGAAGTGGATGCAAAGTTGATTCACAGCGCTGAAAACAGCGTCTTCTTGACAAAAAACTCTTTCAGGCCTAAGCTCCAAATACAGTGTTTGGGGGCGGGTCAAAGTAGACTTTATTTGCGGGCAGCCAATGAAGACCATAGGCTGGCATTATGCAAATTTGTTAGAATCGATTCTTTCTTTTAGGAGACAATAATTTATTAGTCGTGCACTTTGATCTTTAAAACTTAGCAGGCACGAACAGCTATATTACACTGCATTAAAAAGGTAATATTTGAAGAAGCATAATGGGGCATTTTGATAGACTTTTTAGAATTTTCTAGCATCATCAGTTATGCGGAAGCCAGTGTTACGGTCTAAGAACAGGATCATACTGTGTTTAATTGAAACTATTTTATGAAAGCAGTCAAATATTAACAGATACCTGAGGCCCCCATTAGAGACCAGAAGAGAGCACAGAATGGGAAAGGGCCCCATCTAGTGGTTAATTAGTGTATTTGTACAACGTATGACCTGGTGTTCAAAAGTCACAAATGTTTCATCATTCTGCATGTAAATTAATAGTGATAGAACCGAGCACCAGCCAAGTTAATATTTGGCCACTTTGTAATTATCTCTATCAGCCGAATAAA

Function

GO:

id name namespace
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component

KEGG:

id description
K10443 KLHL2_3; kelch-like protein 2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU474422 lncRNA downstream 117803 7611480 ~ 7611811 (-) True G413041
TU474392 lncRNA downstream 149045 7580352 ~ 7580569 (-) True G413019
TU474336 lncRNA downstream 192009 7513956 ~ 7537605 (-) True G412963
TU474330 lncRNA downstream 272510 7456193 ~ 7457104 (-) True G412957
TU474285 lncRNA downstream 331725 7397665 ~ 7397889 (-) True G412913
TU474454 lncRNA upstream 60918 7807617 ~ 7807833 (-) True G413072
TU474477 lncRNA upstream 134805 7881504 ~ 7883796 (-) True G413093
TU474514 lncRNA upstream 347971 8094670 ~ 8099659 (-) True G413127
TU474523 lncRNA upstream 390991 8137690 ~ 8143059 (-) True G413134
TU474531 lncRNA upstream 405865 8152564 ~ 8152795 (-) True G413142
CI01000300_07721516_07724293.mRNA mRNA downstream 4078 7720895 ~ 7725536 (-) True CI01000300_07721516_07724293
CI01000300_07689056_07718164.mRNA mRNA downstream 11177 7688880 ~ 7718437 (-) True CI01000300_07689056_07718164
CI01000300_07619188_07667913.mRNA mRNA downstream 61701 7619188 ~ 7667913 (-) True CI01000300_07619188_07667913
CI01000300_07547135_07562235.mRNA mRNA downstream 167379 7547048 ~ 7562235 (-) True CI01000300_07547135_07562235
CI01000300_07441608_07444010.mRNA mRNA downstream 285546 7441061 ~ 7444068 (-) True CI01000300_07441608_07444010
CI01000300_07750575_07775271.mRNA mRNA upstream 3145 7749844 ~ 7775271 (-) True CI01000300_07750575_07775271
CI01000300_07814364_07828806.mRNA mRNA upstream 66630 7813329 ~ 7829084 (-) True CI01000300_07814364_07828806
CI01000300_07846182_07849825.mRNA mRNA upstream 99169 7845868 ~ 7852391 (-) True CI01000300_07846182_07849825
CI01000300_07859787_07907302.mRNA mRNA upstream 113088 7859787 ~ 7907302 (-) True CI01000300_07859787_07907302
CI01000300_07914090_07942773.mRNA mRNA upstream 167072 7913771 ~ 7942773 (-) True CI01000300_07914090_07942773
TU474008 other downstream 1039281 6652998 ~ 6690333 (-) True G412681
TU473866 other downstream 1514035 6214920 ~ 6215579 (-) True G412555
TU473685 other downstream 1968425 5711685 ~ 5761189 (-) True G412378
TU472166 other downstream 3334493 4390320 ~ 4395121 (-) True G411012
TU471627 other downstream 3649075 4076764 ~ 4080539 (-) True CI01000300_04075307_04079312
TU474529 other upstream 399833 8146532 ~ 8146889 (-) True G413140
TU475129 other upstream 1222749 8969448 ~ 8976000 (-) True G413664
TU476061 other upstream 1911350 9658049 ~ 9660805 (-) False G414498
TU476052 other upstream 1912288 9658987 ~ 9660805 (-) False G414498
TU476415 other upstream 2949312 10696011 ~ 10700634 (-) True CI01000300_10698449_10700497

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001887 True 2612 mRNA 0.51 15 NC_007112.7 20932052 ~ 20970266 (-)
grasscarp (Ctenopharyngodon idella) TU168979 True 209 lncRNA 0.46 1 CI01000028 6376888 ~ 6377096 (+)
striped catfish (Pangasianodon hypophthalmus) TU168979 False 377 lncRNA 0.42 3 NC_047603.1 3082853 ~ 3083564 (-)
bowfin (Amia calva) TU168979 True 408 lncRNA 0.47 2 CM030138.1 10967276 ~ 10982794 (+)
mexican tetra (Astyanax mexicanus) TU168979 False 1030 lncRNA 0.44 3 NC_035910.1 27189188 ~ 27192704 (+)