RNA id: TU473685


Basic Information

Item Value
RNA id TU473685
length 383
RNA type TUCP
GC content 0.49
exon number 2
gene id G412378
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 5711685 ~ 5761189 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGTCCAAGGTCAACGCAGCCGTATACCAGGAAGTTTTAGAGCACTTCATGGTTCCTGCTGCTGACCAACTTTATGGAGATGCAGATTTCATTTTCCAACAGGACTTGGCACCTGCACACAGTGCCAAAGCTACCAGTACCTGGTTTAAGGACCATGGTATCCCTGTTCTTAATTGGCCAGCAAACTTGCCTGACCTTAACCCCATGGAAAATCTATGGGGTATTGTGAAGAGGAANNNNCGATATGCCAGACCCAACAATGCAGAAGAGCTGAAGGCCACTATCAGAGCAACCTGGGCTCTTATAACACCTGAGCAGTGCCACAGACTGATCGACTCCATGCCACGCCGCATTGCTGCAGTACTTCAGGCAAAAGGAGCCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU473671 lncRNA downstream 2779 5708440 ~ 5708906 (-) True G412365
TU473636 lncRNA downstream 7769 5703649 ~ 5703916 (-) True G412339
TU472611 lncRNA downstream 70197 5641202 ~ 5641488 (-) True G411414
TU472599 lncRNA downstream 117461 5593790 ~ 5594224 (-) True G411402
TU472560 lncRNA downstream 134705 5576769 ~ 5576980 (-) True G411372
TU473728 lncRNA upstream 144660 5905849 ~ 5906092 (-) True G412419
TU473730 lncRNA upstream 148235 5909424 ~ 5909624 (-) True G412421
TU473641 lncRNA upstream 175464 5936653 ~ 5937296 (-) True G412342
TU473682 lncRNA upstream 215630 5976819 ~ 5977214 (-) True G412376
TU473746 lncRNA upstream 287048 6048237 ~ 6126873 (-) True G412436
CI01000300_05490981_05504872.mRNA mRNA downstream 206764 5490198 ~ 5504921 (-) True CI01000300_05490981_05504872
CI01000300_05345787_05353985.mRNA mRNA downstream 357700 5345710 ~ 5353985 (-) True CI01000300_05345787_05353985
CI01000300_05338723_05344483.mRNA mRNA downstream 367202 5338323 ~ 5344483 (-) True CI01000300_05338723_05344483
CI01000300_05227185_05241315.mRNA mRNA downstream 470370 5226753 ~ 5241315 (-) True CI01000300_05227185_05241315
CI01000300_05170048_05173465.mRNA mRNA downstream 537901 5169695 ~ 5173784 (-) True CI01000300_05170048_05173465
CI01000300_05852841_05879101.mRNA mRNA upstream 91652 5852841 ~ 5879101 (-) True CI01000300_05852841_05879101
CI01000300_05900360_05934284.mRNA mRNA upstream 139128 5900317 ~ 5934284 (-) True CI01000300_05900360_05934284
CI01000300_05940815_05947079.mRNA mRNA upstream 179360 5940549 ~ 5947079 (-) True CI01000300_05940815_05947079
CI01000300_05956128_05961938.mRNA mRNA upstream 194825 5956014 ~ 5961938 (-) True CI01000300_05956128_05961938
CI01000300_05962858_05963880.mRNA mRNA upstream 201645 5962834 ~ 5964126 (-) True CI01000300_05962858_05963880
TU472166 other downstream 1316564 4390320 ~ 4395121 (-) True G411012
TU471625 other downstream 1629583 4080204 ~ 4082102 (-) True G410508
TU471627 other downstream 1631146 4076764 ~ 4080539 (-) True CI01000300_04075307_04079312
TU471599 other downstream 1903478 3801139 ~ 3808207 (-) True G410498
TU470823 other downstream 2847687 2863158 ~ 2863998 (-) True G409775
TU473866 other upstream 453731 6214920 ~ 6215579 (-) True G412555
TU474008 other upstream 891809 6652998 ~ 6690333 (-) True G412681
TU474529 other upstream 2385343 8146532 ~ 8146889 (-) True G413140
TU475129 other upstream 3208259 8969448 ~ 8976000 (-) True G413664
TU476061 other upstream 3896860 9658049 ~ 9660805 (-) False G414498

Expression Profile