RNA id: TU473728


Basic Information

Item Value
RNA id TU473728
length 244
lncRNA type intronic
GC content 0.43
exon number 1
gene id G412419
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 5905849 ~ 5906092 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATGAATAACAATATATTTGATGTACGGAGCCTGAGAGAGCTGTTGGCACTGTGAAGATCTGAGGCTGTTGGTTTTTCTATGGCCTACTGCACGCTTGTTTAGCTGTTCCCATGCCTGCTTCACTTTCAGCTACATTACTATACTTTGTATCTCTGTTGTTCCTCTAATTAGTGGTGCTTGCAACCATTACTGTTATAGAGTGGTGCACAGATGATGTCAAAACCCGGAAGACTAACTCGCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU473671 lncRNA downstream 196943 5708440 ~ 5708906 (-) True G412365
TU473636 lncRNA downstream 201933 5703649 ~ 5703916 (-) True G412339
TU472611 lncRNA downstream 264361 5641202 ~ 5641488 (-) True G411414
TU472599 lncRNA downstream 311625 5593790 ~ 5594224 (-) True G411402
TU472560 lncRNA downstream 328869 5576769 ~ 5576980 (-) True G411372
TU473730 lncRNA upstream 3332 5909424 ~ 5909624 (-) True G412421
TU473641 lncRNA upstream 30561 5936653 ~ 5937296 (-) True G412342
TU473682 lncRNA upstream 70727 5976819 ~ 5977214 (-) True G412376
TU473746 lncRNA upstream 142145 6048237 ~ 6126873 (-) True G412436
TU473758 lncRNA upstream 188463 6094555 ~ 6094884 (-) True G412448
CI01000300_05852841_05879101.mRNA mRNA downstream 26748 5852841 ~ 5879101 (-) True CI01000300_05852841_05879101
CI01000300_05743542_05743913.mRNA mRNA downstream 161545 5743493 ~ 5744304 (-) True CI01000300_05743542_05743913
CI01000300_05490981_05504872.mRNA mRNA downstream 400928 5490198 ~ 5504921 (-) True CI01000300_05490981_05504872
CI01000300_05345787_05353985.mRNA mRNA downstream 551864 5345710 ~ 5353985 (-) True CI01000300_05345787_05353985
CI01000300_05338723_05344483.mRNA mRNA downstream 561366 5338323 ~ 5344483 (-) True CI01000300_05338723_05344483
CI01000300_05940815_05947079.mRNA mRNA upstream 34457 5940549 ~ 5947079 (-) True CI01000300_05940815_05947079
CI01000300_05956128_05961938.mRNA mRNA upstream 49922 5956014 ~ 5961938 (-) True CI01000300_05956128_05961938
CI01000300_05962858_05963880.mRNA mRNA upstream 56742 5962834 ~ 5964126 (-) True CI01000300_05962858_05963880
CI01000300_05966800_05976695.mRNA mRNA upstream 60020 5966112 ~ 5976695 (-) True CI01000300_05966800_05976695
CI01000300_05982822_06013144.mRNA mRNA upstream 76287 5982379 ~ 6013144 (-) True CI01000300_05982822_06013144
TU473685 other downstream 144660 5711685 ~ 5761189 (-) True G412378
TU472166 other downstream 1510728 4390320 ~ 4395121 (-) True G411012
TU471625 other downstream 1823747 4080204 ~ 4082102 (-) True G410508
TU471627 other downstream 1825310 4076764 ~ 4080539 (-) True CI01000300_04075307_04079312
TU471599 other downstream 2097642 3801139 ~ 3808207 (-) True G410498
TU473866 other upstream 308828 6214920 ~ 6215579 (-) True G412555
TU474008 other upstream 746906 6652998 ~ 6690333 (-) True G412681
TU474529 other upstream 2240440 8146532 ~ 8146889 (-) True G413140
TU475129 other upstream 3063356 8969448 ~ 8976000 (-) True G413664
TU476061 other upstream 3751957 9658049 ~ 9660805 (-) False G414498

Expression Profile